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Report for CCDS18797.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18797.1 Public Mus musculus 4 Lypla2 23 108 98 CCDS HistoryNCBI Gene:26394Re-query CCDS DB by CCDS ID:18797.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18797.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067567.4 ENSMUSP00000064204.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067567.4Link to Ensembl Protein Viewer:ENSMUSP00000064204.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000067567Re-query CCDS DB by Protein ID:ENSMUSP00000064204
Original member Current member EBI ENSMUST00000105852.7 ENSMUSP00000101478.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105852.7Link to Ensembl Protein Viewer:ENSMUSP00000101478.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105852Re-query CCDS DB by Protein ID:ENSMUSP00000101478
Original member NCBI NM_011942.1 NP_036072.1 Updated not alive Link to Nucleotide Sequence:NM_011942.1Link to Protein Sequence:NP_036072.1Re-query CCDS DB by Nucleotide ID:NM_011942Re-query CCDS DB by Protein ID:NP_036072
Current member NCBI NM_011942.2 NP_036072.1 Accepted alive Link to Nucleotide Sequence:NM_011942.2Link to Protein Sequence:NP_036072.1Re-query CCDS DB by Nucleotide ID:NM_011942Re-query CCDS DB by Protein ID:NP_036072Link to BLAST:NP_036072.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036072.1 231 Q9WTL7 231 100% 0 0

Chromosomal Locations for CCDS 18797.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 135969017 135969067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135969144 135969317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135969428 135969529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135969601 135969674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135969803 135969873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135969959 135970006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135970454 135970519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135970608 135970639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135970860 135970937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (696 nt):
ATGTGTGGTAACACCATGTCTGTGCCCCTGCTCACCGACGCAGCCACCGTGTCTGGAGCTGAGCGGGAAA
CGGCCGCGGTTATTTTTTTACATGGACTTGGAGACACAGGGCACAGCTGGGCTGACGCCCTCTCCACCAT
CCGGCTTCCTCATGTCAAGTACATCTGTCCCCATGCGCCCAGGATCCCTGTGACACTCAACATGAAGATG
GTGATGCCCTCCTGGTTTGACCTGATGGGGCTGAGTCCGGATGCCCCAGAGGATGAAGCTGGCATCAAGA
AGGCCGCAGAGAACATCAAGGCTTTGATTGAACATGAGATGAAGAACGGGATTCCTGCCAACCGGATCGT
CCTGGGTGGCTTCTCGCAGGGTGGGGCCCTGTCCCTCTATACAGCACTTACCTGCCCCCACCCTCTGGCT
GGCATTGTGGCATTGAGCTGCTGGCTGCCTCTGCACCGGAACTTCCCCCAAGCAGCCAATGGCAGTGCCA
AGGACCTGGCCATCCTTCAGTGCCACGGGGAGCTGGACCCCATGGTACCTGTTCGGTTTGGAGCCCTGAC
AGCTGAGAAGCTCCGGACTGTTGTCACACCTGCCAGGGTCCAGTTTAAGACATACCCAGGTGTCATGCAC
AGCTCCTGTCCTCAGGAGATGGCAGCTGTAAAGGAATTTCTGGAGAAACTTCTGCCTCCGGTCTAA

Translation (231 aa):
MCGNTMSVPLLTDAATVSGAERETAAVIFLHGLGDTGHSWADALSTIRLPHVKYICPHAPRIPVTLNMKM
VMPSWFDLMGLSPDAPEDEAGIKKAAENIKALIEHEMKNGIPANRIVLGGFSQGGALSLYTALTCPHPLA
GIVALSCWLPLHRNFPQAANGSAKDLAILQCHGELDPMVPVRFGALTAEKLRTVVTPARVQFKTYPGVMH
SSCPQEMAAVKEFLEKLLPPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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