CCDS
Home
FTP
Process
Releases & Statistics
Collaborators
EBI
HGNC
MGI
NCBI
Contact Us
email CCDS
Genome Displays Related Resources
Gene
HomoloGene
MANE
RefSeq
|
![](/corehtml/transparent.gif) |
Report for CCDS27885.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
27885.1 |
Public |
Mus musculus |
15 |
Map3k12 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:26404](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:27885.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 15 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 27885.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000023812.9 |
ENSMUSP00000023812.2 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000023812.9](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000023812.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000023812](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000023812](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000171565.7 |
ENSMUSP00000127629.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000171565.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000127629.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000171565](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000127629](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000169377.7 |
ENSMUSP00000133209.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000169377.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000133209.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000169377](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000133209](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
|
NCBI |
NM_001163643.1 |
NP_001157115.1 |
Updated |
not alive |
![Link to Nucleotide Sequence:NM_001163643.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001157115.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001163643](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001157115](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
|
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001163643.2 |
NP_001157115.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001163643.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001157115.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001163643](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001157115](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001157115.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
|
NCBI |
NM_001358844.1 |
NP_001345773.1 |
Updated |
not alive |
![Link to Nucleotide Sequence:NM_001358844.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001345773.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001358844](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001345773](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
|
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001358844.2 |
NP_001345773.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001358844.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001345773.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001358844](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001345773](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001345773.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
|
NCBI |
NM_009582.4 |
NP_033608.3 |
Updated |
not alive |
![Link to Nucleotide Sequence:NM_009582.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_033608.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_009582](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_033608](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
|
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_009582.5 |
NP_033608.3 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_009582.5](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_033608.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_009582](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_033608](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_033608.3](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 27885.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2667 nt): ATGGCCTGCCTCCATGAAACCCGAACACCCTCCCCTTCCTTTGGGGGCTTTGTGTCTACTCTAAGTGAGG CTTCTATGCGAAAGCTGGATCCAGACACTTCAGACTGCACCCCCGAGAAAGACCTGACGCCCACCCAATG TGTACTTCGAGATGTTGTGCCTCTCGGTGGGCAGGGTGGAGGAGGACCCAGCCCCTCCCCAGGTGGAGAG CCTCCCCCAGAGCCTTTTGCCAATAGTGTCCTCCAGCTACATGAGCAGGATACAGGTGGGCCAGGGGGAG CCACTGGGTCACCTGAGAGTCGAGCATCTAGAGTTCGAGCTGATGAGGTACGTCTGCAGTGCCAGAGTGG CAGTGGCTTCCTTGAAGGTCTTTTTGGCTGCCTGCGCCCTGTCTGGACAATGATTGGCAAAGCCTACTCC ACAGAACACAAGCAACAGCAGGAAGACCTTTGGGAAGTCCCCTTTGAGGAAATCCTGGACCTGCAGTGGG TAGGCTCAGGGGCTCAGGGTGCTGTTTTCCTGGGACGCTTCCACGGGGAGGAGGTAGCTGTGAAGAAGGT TCGAGATCTCAAGGAGACTGACATCAAGCATCTTCGAAAGCTGAAGCACCCCAACATCATCACTTTCAAG GGTGTTTGCACACAGGCCCCCTGCTACTGCATCCTTATGGAATTCTGCGCTCAAGGACAGCTATATGAGG TGCTCAGAGCCGGCCGCCCTGTCACCCCCTCCTTGCTGGTTGACTGGTCCATGGGCATCGCTGGTGGCAT GAATTACCTGCACCTGCACAAGATTATCCACAGAGACCTGAAGTCACCCAACATGCTAATCACATACGAC GATGTGGTGAAGATCTCAGATTTTGGCACTTCCAAGGAGCTGAGTGACAAGAGCACCAAGATGTCCTTTG CAGGAACAGTAGCCTGGATGGCTCCTGAAGTGATCAGAAATGAACCTGTGTCTGAGAAGGTTGACATCTG GTCCTTTGGGGTGGTGCTATGGGAACTACTGACTGGAGAGATTCCCTACAAAGATGTAGATTCCTCAGCC ATCATCTGGGGTGTGGGAAGCAACAGTCTCCACCTGCCTGTACCCTCCAGCTGCCCAGATGGTTTTAAAA TTCTACTTCGCCAGTGCTGGAACAGCAAACCACGAAATCGCCCATCATTCCGACAGATCTTGCTGCACCT GGACATCGCCTCCGCTGATGTGCTCTCTACACCCCAGGAGACTTACTTTAAGTCCCAGGCAGAGTGGCGG GAAGAAGTAAAACTGCACTTTGAAAAGATTAAGTCAGAAGGGACCTGTCTGCACCGCCTAGAAGAGGAAC TGGTGATGCGGAGAAGGGAGGAGCTCAGACATGCCCTGGACATCAGGGAGCACTATGAACGGAAGTTGGA GAGAGCCAACAACCTGTACATGGAACTGAATGCCCTCATGCTGCAACTAGAACTCAAAGAGAGGGAATTG CTCAGGCGAGAGCAGGCTTTAGAAAGGCGGTGTCCTGGTCTACTAAAGTCACACCCTTCTCGGGGCCTCC TACATGGAAACACTATGGAGAAGCTCATCAAGAAAAGGAACGTGCCACAGAAACTGTCGCCCCACAGCAA AAGGCCAGATATTCTCAAGACAGAGTCGTTGCTACCTAAACTAGATGCAGCCCTAAGTGGGGTGGGGCTT CCTGGGTGTCCTAAGGGCCCCCCTTCACCTGGAAGGAGTCGGCGTGGCAAGACCCGTCACCGAAAGGCCA GTGCCAAGGGCAGCTGTGGAGACCTGCCTGGGCTTCGTGCAGCTTTGCCACCCCATGAGCCTGGAGGACT AGGAAGCCCAGGGGGCCTAGGAGTGGGCCCTTCAGCTTGGGATGCTTGCCCCCCTGCTCTCCGTGGACTC CACCATGACCTTCTACTCCGAAAGATGTCATCATCATCCCCAGACCTGCTATCAGCAGCGCTGGGAGCCC GAGGCCGAGGGGCTACAGGGGGAGCTCGGGATCCTGGCTCACCACCTCCACCCCAGGGCGATACTCCTCC AAGTGAGGGATCAGCTCCTGGTTCCACCAGCCCAGATTCGCCTGGGGGAGCTAAAGGGGAACCCCCTCCA CCAGTAGGGCCTGGAGAAGGTGTGGGGCTGCTGGGAACTGGAAGGGAAGGGACTGCAGGCCGGGGAGGAA ACCGGGCTGGGTCCCAGCACTTGACCCCCGCTGCGCTGCTGTACAGGGCTGCTGTGACTCGAAGTCAGAA ACGTGGTATCTCATCTGAAGAAGAAGAAGGAGAGGTAGACAGTGAAGTAGAGCTACCCCCAAGTCAAAGG TGGCCTCAGGGCCCGAACATGCGTCAGTCACTATCTACATTCAGCTCAGAGAACCCATCAGATGTGGAGG AAGGTACAGCTAGTGAGCCTTCCCCAAGTGGCACACCAGAAGTTGGCAGTACCAACACTGATGAGCGACC AGATGAACGATCTGATGACATGTGCTCACAGGGCTCAGAAATTCCACTGGACCTACCTACTTCAGAGGTG GTCCCTGAACGTGAAGCCAGCTCCTTGCCCATGCAACACCAGGATGGCCAGGGCCCCAATCCTGAAGACT CAGACTGTGACAGCACTGAATTGGACAACTCCAACAGCATTGATGCCTTGCGGCCCCCAGCCTCCCTTCC TCCATGA
Translation (888 aa): MACLHETRTPSPSFGGFVSTLSEASMRKLDPDTSDCTPEKDLTPTQCVLRDVVPLGGQGGGGPSPSPGGE PPPEPFANSVLQLHEQDTGGPGGATGSPESRASRVRADEVRLQCQSGSGFLEGLFGCLRPVWTMIGKAYS TEHKQQQEDLWEVPFEEILDLQWVGSGAQGAVFLGRFHGEEVAVKKVRDLKETDIKHLRKLKHPNIITFK GVCTQAPCYCILMEFCAQGQLYEVLRAGRPVTPSLLVDWSMGIAGGMNYLHLHKIIHRDLKSPNMLITYD DVVKISDFGTSKELSDKSTKMSFAGTVAWMAPEVIRNEPVSEKVDIWSFGVVLWELLTGEIPYKDVDSSA IIWGVGSNSLHLPVPSSCPDGFKILLRQCWNSKPRNRPSFRQILLHLDIASADVLSTPQETYFKSQAEWR EEVKLHFEKIKSEGTCLHRLEEELVMRRREELRHALDIREHYERKLERANNLYMELNALMLQLELKEREL LRREQALERRCPGLLKSHPSRGLLHGNTMEKLIKKRNVPQKLSPHSKRPDILKTESLLPKLDAALSGVGL PGCPKGPPSPGRSRRGKTRHRKASAKGSCGDLPGLRAALPPHEPGGLGSPGGLGVGPSAWDACPPALRGL HHDLLLRKMSSSSPDLLSAALGARGRGATGGARDPGSPPPPQGDTPPSEGSAPGSTSPDSPGGAKGEPPP PVGPGEGVGLLGTGREGTAGRGGNRAGSQHLTPAALLYRAAVTRSQKRGISSEEEEGEVDSEVELPPSQR WPQGPNMRQSLSTFSSENPSDVEEGTASEPSPSGTPEVGSTNTDERPDERSDDMCSQGSEIPLDLPTSEV VPEREASSLPMQHQDGQGPNPEDSDCDSTELDNSNSIDALRPPASLPP
|