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Report for CCDS37169.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37169.2 Public Mus musculus 15 Phf21b 23 108 98 CCDS HistoryNCBI Gene:271305Re-query CCDS DB by CCDS ID:37169.2Re-query CCDS DB by GeneID:271305See the combined annotation on chromosome 15 in Sequence Viewer

Public Note for CCDS 37169.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 37169.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000159939.7 ENSMUSP00000125355.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159939.7Link to Ensembl Protein Viewer:ENSMUSP00000125355.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000159939Re-query CCDS DB by Protein ID:ENSMUSP00000125355
Original member Current member NCBI NM_001081166.2 NP_001074635.2 Accepted alive Link to Nucleotide Sequence:NM_001081166.2Link to Protein Sequence:NP_001074635.2Re-query CCDS DB by Nucleotide ID:NM_001081166Re-query CCDS DB by Protein ID:NP_001074635Link to BLAST:NP_001074635.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074635.2 487 Q8C966 487 100% 0 0

Chromosomal Locations for CCDS 37169.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 84787228 84787449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84791065 84791168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84791354 84791429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84791783 84791941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84793896 84793918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84795080 84795134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84797323 84797399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84798643 84798694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84803454 84803585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84804760 84805110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84808066 84808158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84854739 84854804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84855665 84855718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1464 nt):
ATGGAGCTGCAAAGCCGGTCCGAGGCGCTCGCGGTGGAACTCGCGCGCCACCAGAACGGCGACCTCAAGA
AGCAGCTCCACGAAAGGCAGCCACGGATCGCAGCGCTCAGCGACAAACAAGCTTTGGGATCCACCACTGC
AGTGCCTGTCACAGGTCCTCAGGTCAGCTCCCTGCAGAGGTTGGCTGGGCAAGGAGCAGCAGTGCTACCT
CAGGTTAGGCCAAAGACTCTGATTCCAGACAGCCTCCCTGTCACCCCGGGCAGGGACCGGCCACCCAAGC
AACCCCCAACATTCCAAAAGGCCACTGTGGTCAGCATCAAGAACCCCAGCCCAGCCCTCCCCACTGCCAA
CAACACCGTCAACCATGTGCCAACACCCAGCAGCCAGACCCAGGCCCTCACCGAGCCCACCGCCATCACC
TCACCCCTGAGCAGTGCCGGGGTGGCCTATGCCATCATCTCCACCTCCCCCAGCAATGCTGCCACCATCA
CCCCCAGCACCACTGTGCCCGTGGCCAGCGACGGCATCAAAGTGCAGCCCCTCCTCATCAGTGCTGACAA
AAAGGTTATCATCATTCAGCCACAAGTGAAGACACAGCCAGAGAGTTCAGCAGAGCCCGAGCCACCCACG
GAGGAGCCATCTCAGGGAGCTCAGGCCACCAAGGAAGATCAGCCCCCCAGCAAGGAGAATCCTGAGAAAA
TCGCCTTCATGGTAGCTCTAGGCCTGGTCACAACGGAACACCTAGAAGAGATCCAGAGCAAGCGGCAGGA
GCGGAAGCGGAGGAGCACAGCCAACCCTGCCTATAGCGGCTTCTTGGAGACCGAGAGGAAGCGGCTGGCC
TCCAGTTATCTCCACAACCCCTTGTTCCTCACAGCACGAGCCAATGAGGACCCCTGCTGGAAGGGTGAAA
TCACCCATGATGAATTCTGTGCTGCCTGCAAGCGAGGAGCCAGCCTGCAACCCTGCGGCACCTGTTCAGG
GGCCTACCACCTCAGCTGCCTGGACCCGCCCCTTAAGACGCCACCCAAGGGCCTGTGGGTCTGCCCCAAG
TGCCAGCGGAAGGCCTTAAAGAAAGATGAGGGTGTGCCCTGGACTGGGATGCTGGCCATTGTACATTCCT
ATGTCACCCACAAGACAGTGAAAGAAGAGGAGAAGCAGAAATTGTTGCAGCGTGGCAGTGAACTGCAGTC
TGAGCACCAGCAGCTAGAGGAGCGGGACCGGCAGCTGGCCTCAGCTGTGAAGAAATGCTTGGAGCTGAAG
ACAAGCCTCCTGGCCCGCCAACGGGGCACACAGTCATCGCTGGACCGCATCCGGGCCCTCCTCAGACTGA
TCCAGGGTGAGCAGATGCTTCAGGTCGCTATGGCAACCACCAGCCCCACCCCACTTCTGGCCGGGCCCTG
GACCAAGCCTTCCACCACCACCACCATGCGCACTACCCTCCAGCACCCCCAGAATCACAACTGA

Translation (487 aa):
MELQSRSEALAVELARHQNGDLKKQLHERQPRIAALSDKQALGSTTAVPVTGPQVSSLQRLAGQGAAVLP
QVRPKTLIPDSLPVTPGRDRPPKQPPTFQKATVVSIKNPSPALPTANNTVNHVPTPSSQTQALTEPTAIT
SPLSSAGVAYAIISTSPSNAATITPSTTVPVASDGIKVQPLLISADKKVIIIQPQVKTQPESSAEPEPPT
EEPSQGAQATKEDQPPSKENPEKIAFMVALGLVTTEHLEEIQSKRQERKRRSTANPAYSGFLETERKRLA
SSYLHNPLFLTARANEDPCWKGEITHDEFCAACKRGASLQPCGTCSGAYHLSCLDPPLKTPPKGLWVCPK
CQRKALKKDEGVPWTGMLAIVHSYVTHKTVKEEEKQKLLQRGSELQSEHQQLEERDRQLASAVKKCLELK
TSLLARQRGTQSSLDRIRALLRLIQGEQMLQVAMATTSPTPLLAGPWTKPSTTTTMRTTLQHPQNHN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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