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Report for CCDS25992.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25992.1 Public Mus musculus 12 Zbtb1 23 108 98 CCDS HistoryNCBI Gene:268564Re-query CCDS DB by CCDS ID:25992.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25992.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042779.3 ENSMUSP00000041955.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042779.3Link to Ensembl Protein Viewer:ENSMUSP00000041955.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000042779Re-query CCDS DB by Protein ID:ENSMUSP00000041955
Original member Current member NCBI NM_178744.3 NP_848859.1 Accepted alive Link to Nucleotide Sequence:NM_178744.3Link to Protein Sequence:NP_848859.1Re-query CCDS DB by Nucleotide ID:NM_178744Re-query CCDS DB by Protein ID:NP_848859Link to BLAST:NP_848859.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848859.1 713 Q91VL9 713 100% 0 0

Chromosomal Locations for CCDS 25992.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 76385242 76387383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2142 nt):
ATGGCAAAGCCCAGCCACAGCAGCTATGTCCTGCAGCAGCTCAACAACCAAAGAGAGTGGGGCTTTCTCT
GTGACTGCTGTATCGCTATCGACGACATCTACTTCCAAGCACACAAAGCCGTCCTGGCTGCCTGTAGCTC
CTACTTTAGGATGTTTTTCATGAACCATCAGCACAGTACTGCACAACTGAACCTCAGCAACATGAAGATA
AGTGCTGAGTGCTTTGATCTCATTTTGCAGTTCATGTATTTAGGAAAGATCATGACCGCTCCTTCCAGTT
TCGAGCAGTTCAAAGTGGCAATGAACTACCTCCAGCTGTACAATGTTCCTGACTGCTTGGAAGACATACA
GGACGCAGACTGTTCTAGTTCAAAGTGTTCGTCTTCTGCCTCCAGCAGGCAGAGCAGCAAGATGATTTTT
GGGGTGAGAATGTATGAAGACACGGTGGCTAGAAATGGCAATGAAGCCAACAGGTGGTGTGCGGAGCCCA
GTTCAACGGTGAATACGCCGCATCACAGAGAACCTGAGGAAGAGTCTTTGCAGTTGGCCAACTTCCCCGA
GCCGCTGTTTGATGTGTGTAAAAAAAGTTCTGTGTCCAAATTATCTACTCCAAAAGAACGTGTGTCTCGA
CGCTTTGGACGGAGCTTTACCTGTGATAGTTGTGGATTTGGCTTCAGCTGTGAAAAGTTACTAGACGAAC
ATGTGCTGACCTGTACCAACAGACACTCATACCAAAACACGACAAGAGCTTACCACCGAATAGTAGATAT
TAGAGATGGAAAAGATAGTAACATCAAAGCTGAACTTGCTGAAAAGGATTCTTCTAAAACATTTTCTGCA
CAGCCGGACAAATACAGAGAAGACGCCAACCAGGCGCCTGATGATTCAGCCTCGACCACTGGAAGCAGGA
AAAGCACCGTGGAGGCTGGGATAGCTGGTGAGGAGAAAAGCAGAGCTACTGAGACAAAACGAATTATCAT
CAAGATGGAGCCAGAAGATATCCCTGCAGATGACATGAAAGACTTCAACATTATTAAAGTTACTGAGAAA
GACTGCAACGAGTCCACCGACAATGATGAATTAGAAGATGAACCCGAGGAGCCATTTTATAGATACTATG
TTGAGGAAGATGTCGGCATTAAAAAAAGTGGTAGGAAAACCCTAAAACCTCGTATGTCCATCAGCGTGGA
TGAGAGAGGTGGCTTAGAGAACATGAGACCCCCGAATAACACCAGCCCCATACAAGAGGATGCAGAGAAT
GCATCTTGTGAGCTGTGTGGACTCACAATAACTGAGGAGGACCTGTCGTCTCATTACTTGGCCAAGCACA
TTGAAAATATCTGTGCATGTGGTAAATGTGGACAGATACTTGTCAAGGGCAGACAGCTTCAGGAACATGC
TCAGAGGTGCGGAGAACCCCAGGATCTGACAATGAATGGGCTAGGGAACGCTGACGAGAAAATGGACATG
GAAGAGAACCCCGACGAGCAGTCTGAGATAAGAGACATGTTTGTTGAAATGCTGGATGATTTCAGAGACA
ATCATTACCAAATAAATAGTATCCAGAAAAAGCAGTTATTTAAACATTCTGCCTGTCCTTTCCGATGTCC
TAATTGTGGCCAGCGTTTTGAAACTGAAAATTTAGTGGTCGAACATATGTCTAGCTGCCTAGACCAAGAT
ATGTTCAAGGGTGCCATCATGGAAGAAAATGAAAGAGATCACAGAAGAAAACATTTTTGTAATCTGTGTG
GAAAAGGATTTTATCAGCGCTGTCATTTGAGAGAGCACTATACTGTGCACACTAAAGAAAAGCAGTTTGT
TTGTCAGACATGTGGAAAGCAGTTTTTAAGAGAGCGCCAGTTGCGTCTACACAATGATATGCACAAAGGC
ATGGCCAGGTATGTCTGTTCCATTTGTGATCAAGGAAACTTCCGAAAACATGACCATGTACGGCATATGA
TCTCGCACCTGTCTGGTGGGGAGACTATATGCCAGGTCTGCTTTCAGATATTCCCAAATAATGAACAACT
GGAGCAGCATATGGATGTCCATCTGTACACGTGTGGAATATGTGGAGCAAAGTTTAATTTGAGGAAGGAT
ATGAGATCGCATTATAATGCCAAGCATTTGAAAAGAACCTGA

Translation (713 aa):
MAKPSHSSYVLQQLNNQREWGFLCDCCIAIDDIYFQAHKAVLAACSSYFRMFFMNHQHSTAQLNLSNMKI
SAECFDLILQFMYLGKIMTAPSSFEQFKVAMNYLQLYNVPDCLEDIQDADCSSSKCSSSASSRQSSKMIF
GVRMYEDTVARNGNEANRWCAEPSSTVNTPHHREPEEESLQLANFPEPLFDVCKKSSVSKLSTPKERVSR
RFGRSFTCDSCGFGFSCEKLLDEHVLTCTNRHSYQNTTRAYHRIVDIRDGKDSNIKAELAEKDSSKTFSA
QPDKYREDANQAPDDSASTTGSRKSTVEAGIAGEEKSRATETKRIIIKMEPEDIPADDMKDFNIIKVTEK
DCNESTDNDELEDEPEEPFYRYYVEEDVGIKKSGRKTLKPRMSISVDERGGLENMRPPNNTSPIQEDAEN
ASCELCGLTITEEDLSSHYLAKHIENICACGKCGQILVKGRQLQEHAQRCGEPQDLTMNGLGNADEKMDM
EENPDEQSEIRDMFVEMLDDFRDNHYQINSIQKKQLFKHSACPFRCPNCGQRFETENLVVEHMSSCLDQD
MFKGAIMEENERDHRRKHFCNLCGKGFYQRCHLREHYTVHTKEKQFVCQTCGKQFLRERQLRLHNDMHKG
MARYVCSICDQGNFRKHDHVRHMISHLSGGETICQVCFQIFPNNEQLEQHMDVHLYTCGICGAKFNLRKD
MRSHYNAKHLKRT


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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