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Report for CCDS40239.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40239.1 Public Mus musculus 8 Cln8 23 108 98 CCDS HistoryNCBI Gene:26889Re-query CCDS DB by CCDS ID:40239.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40239.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027554.7 ENSMUSP00000027554.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027554.7Link to Ensembl Protein Viewer:ENSMUSP00000027554.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000027554Re-query CCDS DB by Protein ID:ENSMUSP00000027554
Original member NCBI NM_012000.3 NP_036130.1 Updated not alive Link to Nucleotide Sequence:NM_012000.3Link to Protein Sequence:NP_036130.1Re-query CCDS DB by Nucleotide ID:NM_012000Re-query CCDS DB by Protein ID:NP_036130
Current member NCBI NM_012000.4 NP_036130.1 Accepted alive Link to Nucleotide Sequence:NM_012000.4Link to Protein Sequence:NP_036130.1Re-query CCDS DB by Nucleotide ID:NM_012000Re-query CCDS DB by Protein ID:NP_036130Link to BLAST:NP_036130.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036130.1 288 Q9QUK3 288 100% 0 0

Chromosomal Locations for CCDS 40239.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 14894688 14895230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 14896531 14896854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (867 nt):
ATGACTCCTGTGAGCAGCCACGGCTTGGCGGAGAGCATTTTTGACCTGGACTACGCTTCGTGGAAGATTC
GGTCGACTCTAGCGGTTGCTGGCTTTGTCTTCTACCTGGGCGTCTTTGTAGTCTGCCATCAGCTCTCATC
GTCCCTGAATGCCACCTACCGCTCCCTGGCGGCCAAAGAGAAGGTCTTCTGGAACCTGGCGGCGACGCGT
GCTGTCTTCGGCGTCCAGAGCACAACTGCAGGCCTGTGGGCCCTGCTGGGAGACCCCGTGCTCTATGCCG
ACAAAGCTCTCGGGCAGCAGAACTGGTGTTGGTTTCACATCACCACGGCCACTGGCTTCTTCTTCTTTGA
GAATGTGGCCGTTCACCTGTCCAACCTGTTCTTCCGCACCTTTGACTTGTTTCTGGTTGTCCACCACCTC
TTTGCCTTTCTTGGGTTCCTGGGTTCAGCGATCAATCTCAGAGCTGGCCACTATCTAGCCATGACCACGT
TGCTCCTAGAGATGAGCACGCCCTTCACCTGCATTTCCTGGATGCTCCTGAAGGCTGGGTGGTCAGACTC
CCTGTTCTGGAAGGCCAACCAGTGGCTAATGATCCACATGTTTCACTGTCGAATGATCCTCACCTACCAC
ATGTGGTGGGTGTGCTTCTGTCACTGGGACGCCCTCACCAGCAGCCTGCACCTGCCCCACTGGGCACTGT
TCCTTTTCGGGCTGGCCCTGCTCACGGCCGTCATTAACCCTTACTGGACACACAAGAAGACCCAGCAGCT
CCTCCATCCCGTGGATTGGAACTTTGCACAGGAGGAAGCCAAGGGCAGCAGGCAAGAAAGGACCAATGGC
CAGGTGCCTCGGAAAAAGAGGTTGTAG

Translation (288 aa):
MTPVSSHGLAESIFDLDYASWKIRSTLAVAGFVFYLGVFVVCHQLSSSLNATYRSLAAKEKVFWNLAATR
AVFGVQSTTAGLWALLGDPVLYADKALGQQNWCWFHITTATGFFFFENVAVHLSNLFFRTFDLFLVVHHL
FAFLGFLGSAINLRAGHYLAMTTLLLEMSTPFTCISWMLLKAGWSDSLFWKANQWLMIHMFHCRMILTYH
MWWVCFCHWDALTSSLHLPHWALFLFGLALLTAVINPYWTHKKTQQLLHPVDWNFAQEEAKGSRQERTNG
QVPRKKRL


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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