NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS23351.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23351.1 Public Mus musculus 9 Tinag 23 108 98 CCDS HistoryNCBI Gene:26944Re-query CCDS DB by CCDS ID:23351.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23351.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034911.6 ENSMUSP00000034911.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034911.6Link to Ensembl Protein Viewer:ENSMUSP00000034911.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000034911Re-query CCDS DB by Protein ID:ENSMUSP00000034911
Original member Current member NCBI NM_012033.3 NP_036163.3 Accepted alive Link to Nucleotide Sequence:NM_012033.3Link to Protein Sequence:NP_036163.3Re-query CCDS DB by Nucleotide ID:NM_012033Re-query CCDS DB by Protein ID:NP_036163Link to BLAST:NP_036163.3

Chromosomal Locations for CCDS 23351.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 76951897 76952031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 76962209 76962254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 76996893 76997016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 76999829 76999874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77001581 77001761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77005630 77005780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77008942 77009065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77026890 77027004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77031689 77031778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77032426 77032489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77045349 77045700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1428 nt):
ATGTGGACTGGATATAAGATCTTAATCTTCTTCTCTCTGACGACAGACATCTGCACTGAGACTCATTTCT
CTCAAGGAGAAGCAGAACCAGGGCCAAGATTCACTAGAAATCACACCATTTTTGAAGGTTCTCGGCACAA
AAGGGCCATTTTCCAAGGGGAATACTGTAGGCGCTTTGGCTGTTGTGAAGCTAGAGATGACACCTGTGTC
ACTCAGTTCTATGAGGCCAATGCACTGTGTTACTGTGACAGCTTCTGTGAGCGGGACACCTCTGATTGCT
GTCCTGATTACAAGTCATTCTGCCACGAAGAAAAAGAAGAGCCTCCTTTCCAACAGCCTTCAGACCCAGA
AGGTTGCTTCAGAGATAGCCAGCATTATGAAGAAGGATCAGTAGTTAAAGAAAACTGCAACTCCTGTACA
TGTTCAGGACAGCAGTGGAAATGTTCCCAACATGTGTGCCTTGTTCATCCAGAATTAATTGACCACATCA
ATAAAGGAGACTATGGATGGACAGCACAGAATTATAGCCAATTCTGGGGAATGACCTTAGAAGAAGGATT
CAAATTCCGCCTCGGCACCTTGCCACCTAGCCCCATGCTTCTCAGCATGAATGAAATGACAGCTTCTTTT
CCTCCCAGAGCTGATCTTCCTGAGATCTTCATTGCTTCTTATAAGTGGCCTGGATGGACTCATGGTCCAC
TGGATCAAAAAAACTGTGCTGCATCCTGGGCTTTTTCCACCGCAAGTGTGGCAGCTGACCGAATTGCAAT
TCAGTCCAAGGGTCGATACACAGCCAATCTCTCGCCTCAGAATTTGATCTCTTGTTGTGCCAAGAATCGT
CACGGATGCAACAGTGGAAGCATAGATAGGGCCTGGTGGTTCCTGAGAAAACGTGGACTGGTATCTCATG
CATGCTACCCACTTTTCAAGGACCAAAACACTACCAATAATATCTGTGCTATGGCAAGTAGATCAGATGG
GCGGGGAAAACGGCATGCCACAAAGCCATGTCCCAACAGCTTCGAGAAATCCAACAGGATTTACCAATGT
TCTCCTCCATACAGAGTCTCTTCCAATGAAACTGAAATTATGAGAGAAATCATACAAAATGGACCAGTTC
AAGCCATAATGCAAGTCCATGAAGACTTCTTTTATTATAAGACAGGAATATACAGACATGTTGTCAGCAC
AAATGAAGAACCAGAAAAGTATAAAAAACTTCGGACACATGCAGTTAAACTCACTGGATGGGGCACACTG
AGAGGAGCACGAGGAAAAAAAGAAAAATTTTGGATTGCTGCCAATTCCTGGGGAAAGTCATGGGGAGAGA
ATGGCTATTTTAGGATTCTTCGAGGAGTAAATGAATCTGACATTGAGAAATTGATTATCGCAGCGTGGGG
CCAACTGACAAGTTCAGATGATCCATAG

Translation (475 aa):
MWTGYKILIFFSLTTDICTETHFSQGEAEPGPRFTRNHTIFEGSRHKRAIFQGEYCRRFGCCEARDDTCV
TQFYEANALCYCDSFCERDTSDCCPDYKSFCHEEKEEPPFQQPSDPEGCFRDSQHYEEGSVVKENCNSCT
CSGQQWKCSQHVCLVHPELIDHINKGDYGWTAQNYSQFWGMTLEEGFKFRLGTLPPSPMLLSMNEMTASF
PPRADLPEIFIASYKWPGWTHGPLDQKNCAASWAFSTASVAADRIAIQSKGRYTANLSPQNLISCCAKNR
HGCNSGSIDRAWWFLRKRGLVSHACYPLFKDQNTTNNICAMASRSDGRGKRHATKPCPNSFEKSNRIYQC
SPPYRVSSNETEIMREIIQNGPVQAIMQVHEDFFYYKTGIYRHVVSTNEEPEKYKKLRTHAVKLTGWGTL
RGARGKKEKFWIAANSWGKSWGENGYFRILRGVNESDIEKLIIAAWGQLTSSDDP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH