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Report for CCDS23161.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23161.1 Public Mus musculus 9 Zw10 23 108 98 CCDS HistoryNCBI Gene:26951Re-query CCDS DB by CCDS ID:23161.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23161.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034803.9 ENSMUSP00000034803.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034803.9Link to Ensembl Protein Viewer:ENSMUSP00000034803.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000034803Re-query CCDS DB by Protein ID:ENSMUSP00000034803
Original member Current member NCBI NM_012039.2 NP_036169.1 Accepted alive Link to Nucleotide Sequence:NM_012039.2Link to Protein Sequence:NP_036169.1Re-query CCDS DB by Nucleotide ID:NM_012039Re-query CCDS DB by Protein ID:NP_036169Link to BLAST:NP_036169.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036169.1 779 O54692 779 100% 0 0

Chromosomal Locations for CCDS 23161.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 49055683 49055787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49057643 49057777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49060570 49060671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49060868 49060945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49061055 49061214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49062193 49062345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49064010 49064201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49066679 49066842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49068660 49068842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49069574 49069812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49071582 49071653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49073203 49073372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49074019 49074149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49074905 49075036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49077452 49077654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49078199 49078319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2340 nt):
ATGGCCTCTTTCGTGACAGAAGTCTTGGCCCACTCGGGGAGCCTGGAGAAGGAGGATCTGGGCACCAGGA
TCAGCCGCCTGACCCGGCGGGTGGAGGAGATCAAGGGTGAAGTATGCAATATGATCAGCAAGAAGTACAG
TGAGTTCCTGCCTACCATGCAGAGTGCGCAGGCCCTAGTTACCCAGGTGGACACTCTATCTAACGACATC
GACCAGCTGAAATCCAGGATAGAGACTGAGGTCTGTCGGGATCTTCACATATCAACTGTTGAGTTTACAA
ACCTGAAGCAGCAGCTGGAAAGAGACTCTGTAGTCCTAACTCTGCTCAAACAACTCCAAGAGTTTTCCTC
TGCTATTGAAGAGTATAACAGTGCGTTAGCAGAGAAGAAGTACATCCCTGCTGCTCGGCACCTGGAGGAG
GCTCAGGAGTGCTTGAAGTTATTAAAGTCCAGAAAATGCTTTGACTTAAAAATGTTGAAGTCTCTCAGCA
TGGAGCTCACCGTGCAGAAGCAGAACATACTGTACCACCTGGGAGAAGACTGGCAGAAGCTGGTTGTATG
GAAGTTTCCGCCGGCAAAAGATACCAGCAGCTTAGAGTCTTGTCTACAAACAGAGCTTCATTTATGCACT
GAGCAGCCGGAGAAAGAGGACATGACTCCTCTGCCGTCCATCAGTTCTGTCCTCTTGGCCTTTTCCATTC
TTGGAGAATTACCCACCAAGCTGAAGTCATTTGGTCAGATGCTGCTGAAGTATATCCTTAAGCCTCTGGT
GACCTGCCCGTCGCTCCATGCTGTGATTGAAAGGCAGCCAAGTTCAGTTAGCATTTGTTTCGAGTCTCTG
ACGACGGACTTGGAACACCCATCACCACCCGAAGCTTTTGCAAAGATCCGATTGGTCCTGGAAGTGCTCC
AGAAACAGCTTCTAGATTTGCCTCTTGATGCTGACCTAGAAATTGGAAAAGTCCCTGGGATCGTGTTGGC
TGAGATGCTTGGTGAGGGGATCTGGGAGGACCTTTCTGAGTGCCTCATCAGAAACTGCTTGGTTTACTCT
ATTCCCACAAACAGCAGCAAGCTCCAGGAATACGAAGAGATTATACAGTCCACAGAAGAATTTGAAAAGT
TCCTAAAGGAGATGAGGTTTTTAAAAGGCGATACTACTGACTTGCTGAAATATGCTCGCAATATCAATTC
TCATTTTGCTAATAAGAAGTGCCAGGATGTGATTGTGGCGGCTAGAAATCTCATGACCTCTGAGATTCAC
AACACTGTCAAGATTGGTCCCGATTGTAAGGAAGCCTTACCAGACTTACCCAGTCCTGATGCTGATCACA
AGCTACAAGTACAGACGGTCTGCAAAGCGCAGTTCACCGACGCCGGGAACCTAGAGCCTGAGACTTCTCT
GGACCCTCAGTCCTTTTCTTTACCCACGTGCCGCATCAGCGAGGCTGTGAAGAAGTTAATGGAGCTCGCT
TATCAGACTTTACTTGAGGCAACAACAAGTAGCGACCAATGTGCTGTCCAGCTCTTCTACTCAGTGAGGA
ATATCTTCCATTTGTTCCATGATGTGGTACCAACATACCACAAGGAGAACCTTCGGAAGCTCCCCCAGTT
GGCTGCCATTCACCACAACAACTGCATGTATATTGCTCACCACTTGCTGACCCTCGGTCATCAGTTCAGA
TTGCGGCTCGCCCCCATCCTTTGCGATGGCACGACCACCTTTGTGGATCTTGTACCTGGCTTCAGAAGAC
TTGGGACGGAGTGCTTTTTGGCCCAAATGCAGGCACAGAAAGGAGAACTTCTGGAGAGATTGTCAAGTGC
TAGAAGCTTTGCGAACATGGACGACGAAGAGAATTACTCTGCAGCGAGCAAGGCAGTGAGGCAGGTGCTG
CACCAGCTAAGGAGACTTGGGATCGTGTGGCAGGATGTCCTGCCAGTGAACATATACTGCAAGGCCATGG
GGACCTTGCTGAACACAGCGATTGCTGAGATGATGAGCAGGATCACTGCTCTAGAGGACATCTCGACTGA
AGATGGTGATAGATTGTATTCCCTGTGCAAAACAGTGATGGATGAAGGTCCACAAGTGTTTGCACCTCTG
TCTGATGAAAACAAAAACAAGAAATACCAAGAAGAGGTTCCCGTCTATGTGTCCAAATGGATGCCTTTCA
AAGAACTCATGATAATGCTACAAGCTAGCTTGCAAGAAATTGGAGATCGGTGGGCAGATGGAAAAGGGCC
CCTGGCAACTGCATTCCCTTCCAGCGAAGTCAAAGCTTTAATCCGTGCCTTGTTCCAGAACACAGAAAGA
AGAGCAGCTGCCCTTGCTAAGATTAAATAG

Translation (779 aa):
MASFVTEVLAHSGSLEKEDLGTRISRLTRRVEEIKGEVCNMISKKYSEFLPTMQSAQALVTQVDTLSNDI
DQLKSRIETEVCRDLHISTVEFTNLKQQLERDSVVLTLLKQLQEFSSAIEEYNSALAEKKYIPAARHLEE
AQECLKLLKSRKCFDLKMLKSLSMELTVQKQNILYHLGEDWQKLVVWKFPPAKDTSSLESCLQTELHLCT
EQPEKEDMTPLPSISSVLLAFSILGELPTKLKSFGQMLLKYILKPLVTCPSLHAVIERQPSSVSICFESL
TTDLEHPSPPEAFAKIRLVLEVLQKQLLDLPLDADLEIGKVPGIVLAEMLGEGIWEDLSECLIRNCLVYS
IPTNSSKLQEYEEIIQSTEEFEKFLKEMRFLKGDTTDLLKYARNINSHFANKKCQDVIVAARNLMTSEIH
NTVKIGPDCKEALPDLPSPDADHKLQVQTVCKAQFTDAGNLEPETSLDPQSFSLPTCRISEAVKKLMELA
YQTLLEATTSSDQCAVQLFYSVRNIFHLFHDVVPTYHKENLRKLPQLAAIHHNNCMYIAHHLLTLGHQFR
LRLAPILCDGTTTFVDLVPGFRRLGTECFLAQMQAQKGELLERLSSARSFANMDDEENYSAASKAVRQVL
HQLRRLGIVWQDVLPVNIYCKAMGTLLNTAIAEMMSRITALEDISTEDGDRLYSLCKTVMDEGPQVFAPL
SDENKNKKYQEEVPVYVSKWMPFKELMIMLQASLQEIGDRWADGKGPLATAFPSSEVKALIRALFQNTER
RAAALAKIK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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