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Report for CCDS18672.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18672.2 Public Mus musculus 4 Zscan20 23 108 98 CCDS HistoryNCBI Gene:269585Re-query CCDS DB by CCDS ID:18672.2See the combined annotation on chromosome 4 in Sequence Viewer

Public Note for CCDS 18672.1
The coding region has been updated to represent an alternative 5' splice pattern, resulting in a longer N-terminus that is more supported by available transcript and homology data. The update adds a SCAN (leucine rich region) domain to the protein.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 18672.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097877.8 ENSMUSP00000095487.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097877.8Link to Ensembl Protein Viewer:ENSMUSP00000095487.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000097877Re-query CCDS DB by Protein ID:ENSMUSP00000095487
Original member NCBI NM_177758.4 NP_808426.2 Updated not alive Link to Nucleotide Sequence:NM_177758.4Link to Protein Sequence:NP_808426.2Re-query CCDS DB by Nucleotide ID:NM_177758Re-query CCDS DB by Protein ID:NP_808426
Current member NCBI NM_177758.5 NP_808426.2 Accepted alive Link to Nucleotide Sequence:NM_177758.5Link to Protein Sequence:NP_808426.2Re-query CCDS DB by Nucleotide ID:NM_177758Re-query CCDS DB by Protein ID:NP_808426Link to BLAST:NP_808426.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808426.2 1030 B2KFW1-1 1030 100% 0 0

Chromosomal Locations for CCDS 18672.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 128585604 128586844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128588016 128588444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128589452 128590141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128591473 128591557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128591816 128591892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128592335 128592506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128604205 128604603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3093 nt):
ATGATGGCTGTGGCCTCACCTCCGCCAGAGCCGGAAGACCTCCTGATTGTGAAGCTGGAGGAGGACTCGT
GGGGATCAGACTCCAGACCCGAGAAGGAGAGCCACAGCCCCGTCCCTGGCCCCGAGGTTTCCCGCCGGTG
TTTCAGGCAGTTCCGATACCGGGATGCAGCTGGACCCCATGAGGCCTTCAGCCAGCTCTGGGCGCTCTGC
TGTCGTTGGCTGAGACCTGAGCTTCGCCTCAAAGAACAGATCCTGGAACTGTTGGTGCTGGAGCAGTTCC
TGTCCATCTTACCCAGGGAGGTGCAGACCTGGGTGCAGGCACGACACCCCGAGAGCGGAGAGGAGGCGGT
GGCCCTGGTGGAGGATTGGCACCGAGAGGCCTGGGCTGCCGGACAGCAGGGACTGGAGCTATGCTCTGAA
GACTCCAGGTCCTTCGAAGCAGTTCAGGAGTTCCAGAGGTTCCAGCTGCAGCCAGTGACCCACGGCTCTG
AGGGCCAGCCCCGAAAACAGTGGGTGGAGAATGCACGTCCCGACCTTTCCAAGATGCCACCTGAGTCCTT
GAAAGAGAGTGCTGTCCTCACACCCCAAGCCCCAACTGTTCCAAAGATGGCGAGCATTGGAGATTGGGAG
GTGGCAGGCAAGTCCCAGGAAACCCCGAGCCCCAGTAGACAAGCCAAGAAGGAGCCCTGCCAGGACCCCG
CAGGAGGTGATCGTGGGGACAGTGCGTGCCTGGGAGTTCCAGCTTCAAAGCCAAGTGCCACCTCCCAGCA
AGAGCAAGGACCGGAGATTTGGGGTCTGAGCCTTATAAATTCTGGGAATGGGAGTGCTGCAGACGATAGC
CTGGACAGTGCGCAAGACAAGCCAGTGCAGGCAGTGGCCCAGGCAGACTCAAGGGCCTGGGGAGAGCCGT
GCCAATGGGGTGCGGAGGACATGAAGGTGTCAGGTGTTCACTGGGGCTATGAGGAAACCAAGACTTTCCT
GGCCATCTTAAGTGAGTCTCCTTTCTCTGAAAAGCTCCAGACCTGTCACCAGAACCGCCAGGTATACCGG
GCTATCGCAGAGCGACTGAGGGCACGGGGCTTCTTGCGGACTCTGGAGCAGTGTCGCTACAGGGTCAAAA
ACCTTCTCCGGAACTACCGGAAAGCCAAGAACAGCCATCCGCCAGGGACCTGCCCCTTCTATGAGGAGCT
GGAGGCCCTTGTGAGGGCTCGGACAGCCATCAGAAGAACCTCAGGTGGGCCAGGAGAGGCAGTGGCACTC
CCCAGGCTGGGTGACAGCGACACTGAGATGGATGACCAAGACGAAGGGAGCTGGGAGCCCGAGGAGACCG
TGGAAGACTGCAGTGGTTCTGGCCTGGCCGCCGAGGAGTCTCTTCAGGGGCCCAGGATTGCAGGGGGCCC
AGCTCTGCTCCAGAGCCGTATTGCAGGCGTGCACTGGGGCTTCGAAGAGACCAAGGTCTTTCTGGCAATT
CTCAGTGAGTCCCCCTTCGCCGAAAAGCTTCGCACCTGTCACCAAAACAGCCAGATATACCGGGCCATCG
CTGAACGGCTGCGTGCGCTGGGTTTCCTGCGGACGCTGGAACAATGCCGCTACCGATTCAAGAACCTTCT
TCGAAGCTACAGGAAAGCCAAGAGCAGCTGTCCACCAGGAACCTGCCCGTTCTATGAGGAGATGGACTCA
CTGATGAGGGCTCGGACTGTGATCAGAGCCGTGGAGATGGTAGGAGAAGCCACAGGCCTCCCTGGATCTG
GGCAGAGCAGTACTGAGGCTGATGACCAAGAGGCCTGGGGTGAGATGGAAGATGAGGACGCCGTTAGACT
TCTGACTCCAGACTCCCAGCCTGCAGATGCAGGATTTGAGTTGAAGCGTGAGGAAGAAGACCAGATTTCA
GAGCAGGATGTTTTGGGGGATTTGCCTGGCGCCTTATCAAGATATACCACCAAAGCCGTTTGCCAGCCTT
GTGACTGGGGGGAGGACCATGTGAACGGAAATGAAGGGGAGTGGAGGAACACATGGGAAGAGTGCTCCTC
TGAGGAGGACTTAGAAAAACTCATTGACCACCAAGGCCTGTACCTCACAGAGAAACCCTACGGATGTGAC
ACACGTGCCAAAAGCTTCAGTCGGAAAGTGCATTTCTTTGCCCCGCAGCGGACCCATTCAAGTGAGAAAC
CCTACAAGTGTCTTGGCTCTGGGAAGAGTTTTAGTGACCGTGCCAACCTCAGTACCCACCAGAGAATCCA
TATTGGAGAGAAGCCGTACAGATGCCTGGAGTGTGGGAAGAGCTTCAATGACCCCTCTAACCTCATCACC
CACCAGAGAACCCACACAGGGGAAAAGCCCTATAAATGTGGGCTGTGTTGGAAAAGCTTTAACCAGAGCT
CAAACCTGCTGAAACATCAGCGGGTCCACTTGGGAGGACCTCCCAACCAGCGGGATGAGCCCGGGGAGAA
CTTTGGCCAAAGTCTATCATACAGTGCTCACTGGAGACGAAATTCTACACAGGAGGGACCTAAAGAACCT
CAGAATATCAGCATGGGTGCCGACTCTCCTGGAGCCTGTCACCCCAACTCCGGGGAGAAGCTGTACTCGT
GCCCTGAGTGTGGAAGGTGCTTCTCTAAGAGCTCTGCCCTCACGAGTCACCAAAGGATCCACAGTGGCGA
GAAGCCGTATGAGTGTGCCGTGTGCGGGAAGAGTTTCAGCAAGAGCTCCAGCCTGGCTAACCACCGACGG
ACTCACACCGGCGAGAAGCCGCACAAGTGTGCGGACTGCGGGAAGTGCTTCAGCGAGCGTTCCAAGCTCA
TCACCCACCAGAGGGTCCACACGGGAGAGAAGCCCTACGAATGCCCCGAGTGTGGCAAGTTCTTCCGAGA
CCGCTCCAACCTCATCACCCACCAGAGGATTCACACGGGAGAGAAGCCGTACAAGTGCAGAGAGTGCGGG
AAGTGCTTCAACCAGAGCTCCAGCCTCATCATTCACCAGCGGATTCACACGGGCGAGAAACCCTACAAGT
GCACAGAATGCGGCAAAGACTTCAACAACAGCTCCCACTTCAGCGCCCACCGCAGAACCCACGCGGGAGG
GAAAGCGTTGTAG

Translation (1030 aa):
MMAVASPPPEPEDLLIVKLEEDSWGSDSRPEKESHSPVPGPEVSRRCFRQFRYRDAAGPHEAFSQLWALC
CRWLRPELRLKEQILELLVLEQFLSILPREVQTWVQARHPESGEEAVALVEDWHREAWAAGQQGLELCSE
DSRSFEAVQEFQRFQLQPVTHGSEGQPRKQWVENARPDLSKMPPESLKESAVLTPQAPTVPKMASIGDWE
VAGKSQETPSPSRQAKKEPCQDPAGGDRGDSACLGVPASKPSATSQQEQGPEIWGLSLINSGNGSAADDS
LDSAQDKPVQAVAQADSRAWGEPCQWGAEDMKVSGVHWGYEETKTFLAILSESPFSEKLQTCHQNRQVYR
AIAERLRARGFLRTLEQCRYRVKNLLRNYRKAKNSHPPGTCPFYEELEALVRARTAIRRTSGGPGEAVAL
PRLGDSDTEMDDQDEGSWEPEETVEDCSGSGLAAEESLQGPRIAGGPALLQSRIAGVHWGFEETKVFLAI
LSESPFAEKLRTCHQNSQIYRAIAERLRALGFLRTLEQCRYRFKNLLRSYRKAKSSCPPGTCPFYEEMDS
LMRARTVIRAVEMVGEATGLPGSGQSSTEADDQEAWGEMEDEDAVRLLTPDSQPADAGFELKREEEDQIS
EQDVLGDLPGALSRYTTKAVCQPCDWGEDHVNGNEGEWRNTWEECSSEEDLEKLIDHQGLYLTEKPYGCD
TRAKSFSRKVHFFAPQRTHSSEKPYKCLGSGKSFSDRANLSTHQRIHIGEKPYRCLECGKSFNDPSNLIT
HQRTHTGEKPYKCGLCWKSFNQSSNLLKHQRVHLGGPPNQRDEPGENFGQSLSYSAHWRRNSTQEGPKEP
QNISMGADSPGACHPNSGEKLYSCPECGRCFSKSSALTSHQRIHSGEKPYECAVCGKSFSKSSSLANHRR
THTGEKPHKCADCGKCFSERSKLITHQRVHTGEKPYECPECGKFFRDRSNLITHQRIHTGEKPYKCRECG
KCFNQSSSLIIHQRIHTGEKPYKCTECGKDFNNSSHFSAHRRTHAGGKAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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