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Report for CCDS38902.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38902.1 Public Mus musculus 4 Sytl1 23 108 98 CCDS HistoryNCBI Gene:269589Re-query CCDS DB by CCDS ID:38902.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38902.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030674.7 ENSMUSP00000030674.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030674.7Link to Ensembl Protein Viewer:ENSMUSP00000030674.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000030674Re-query CCDS DB by Protein ID:ENSMUSP00000030674
Original member Current member NCBI NM_031393.2 NP_113570.2 Accepted alive Link to Nucleotide Sequence:NM_031393.2Link to Protein Sequence:NP_113570.2Re-query CCDS DB by Nucleotide ID:NM_031393Re-query CCDS DB by Protein ID:NP_113570Link to BLAST:NP_113570.2

Chromosomal Locations for CCDS 38902.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 133253169 133253308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133253455 133253660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133255533 133255632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133255734 133255812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133256042 133256200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133256488 133256584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133256865 133257031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133257136 133257249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133257417 133257511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133257734 133257821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133258861 133258906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133258982 133259057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133259288 133259436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133260853 133261043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1707 nt):
ATGCCCCAGAGAGGCCACCCATCTCAGGAGAGGCTTTGGGCCCTGCCCTCCCTCCCCATGGCACATGGAC
CAGGATCTGAAGCTGAGGGGTTGCTGGACCTCAGCTTCCTGACAGAGGAGGAACAGGAGGCCATCTCTGA
TGTCCTCAAACGAGATGCCCACCTGCGCCAGCTGGAGGAAGGGCGGGTCAGCAAGCTCCGGGCCTCCCTG
GAAGACCCCTGGCAGCTGAAGATCCTGACAGGGGACTGGTTCCAAGAAGCGCGTTCCCAGAGGCACCATC
ACGCCCATTTTGGTTCTGACCTCGTCCGGGCTTCTATCCGAAGGAAGAAGAGCCCAAAGGGGGACCAGGC
TCTGGGGAGTGATGGTGAAGCAGAGGCTGCTGGGGAAAACACCATTGAAGGAGAGCCGGAGTCCAGGGTC
TCCATAGAGGTGGCAGCTCCAGAGAGAAACACTGAGACCCAAGGGCCTGATTTGTTCTCACCATATGTAC
CCTCAAAGGCTTCCGAAGGTCAGGAGGAGGAGCCCCAGGACCAGGAATGTGAGCTGGAGGCCCCTGGCGA
AGGGGGTGTGCAGGTGGCAGAGGCGGACCCAGAGCTGGATCCTGAGCAGAAGGCGGAGCAGGAGTCCCAG
CCAACTCCAGCCCAGTCCAAGGCGACCTCCAAGATCCTGGAGAATGGAGAAGAGGCCCCGGGGCTCGGCC
CCTCTCTTGACCGCATGCTCAGCAGCAGCTCCTCTGTGTCCAGCCTCAATTCCTCTACGCTGAGCGGCAG
CCTGATGAGCCTATCCGGGGAGGCAGAGGCAGGCACGGTGCAGGTGCGAGGCTCCGTGCTCTTCTCGCTG
CGCTACGAGCCTGGCACCTCTGAGCTGCGAGTACAGGTGATCCAGTGCCAGGGCCTGGCCGCTGCCCGGC
GACGCCGCTCCGATCCCTACGTGAAAAGCTACCTCCTCCCGGATAAGCAGAGCAAGCGTAAGACGTCAGT
GAAGAAACGGAATCTGAACCCGATCTTCAACGAGACTCTGCGGCACTCTGTCCAGCAGGCTGATCTCCCA
GGCCGCGTGCTGAGCCTGTCCGTGTGGCACCGGGAAAGTCTGGGTCGCAACATCTTCCTGGGAGAAGTAG
AAGTGCCCCTAGACACATGGAACTGGGACTCTGAGGCTACCTGGCTCCCCCTGCAGCCTCGGGTTCCTCC
ATCTCCAGATGAGCTTCCCAGCCGTGGACTGCTGTCTCTGTCCCTTAAGTATGTCCCTGCCGGCTCAGAG
GGAGGAGGACAGCCTCAGAGTGGGGAGTTACACTTCTGGGTAAAGGAAGCTCAGAGCCTGGTACCACTGC
GACCAGGATCCCTGGACACTTACATTCAATGCTCAGTGCTGCCTGATGACAGTCGGGCCAGCCGCCAACG
CACAAGAGTGGTTCGAAGAAGTCTCAGCCCTGTGTTCAACCACACCATGGTTTATGACGGCTTCGGGCCT
GCTGACCTACGCCAGGCCTGTGCCGAGCTCTCCCTGTGGGACCATGGGGCCCTGGCCAGTCGCCAGCTGG
GGGGCACACGCCTCAGCCTTGGTACAGGCAGCAGTTATGGGCTTCAGGTGCCCTGGATGGATTCCACACC
GGAGGAGAAGCAGCTGTGGCAGACACTCCTGGAGCGGCCCTGTGAGTGGGTGGATGGCCTTCTGCCCCTC
AGAACCAACCTGGTCCCCAGGGCATAG

Translation (568 aa):
MPQRGHPSQERLWALPSLPMAHGPGSEAEGLLDLSFLTEEEQEAISDVLKRDAHLRQLEEGRVSKLRASL
EDPWQLKILTGDWFQEARSQRHHHAHFGSDLVRASIRRKKSPKGDQALGSDGEAEAAGENTIEGEPESRV
SIEVAAPERNTETQGPDLFSPYVPSKASEGQEEEPQDQECELEAPGEGGVQVAEADPELDPEQKAEQESQ
PTPAQSKATSKILENGEEAPGLGPSLDRMLSSSSSVSSLNSSTLSGSLMSLSGEAEAGTVQVRGSVLFSL
RYEPGTSELRVQVIQCQGLAAARRRRSDPYVKSYLLPDKQSKRKTSVKKRNLNPIFNETLRHSVQQADLP
GRVLSLSVWHRESLGRNIFLGEVEVPLDTWNWDSEATWLPLQPRVPPSPDELPSRGLLSLSLKYVPAGSE
GGGQPQSGELHFWVKEAQSLVPLRPGSLDTYIQCSVLPDDSRASRQRTRVVRRSLSPVFNHTMVYDGFGP
ADLRQACAELSLWDHGALASRQLGGTRLSLGTGSSYGLQVPWMDSTPEEKQLWQTLLERPCEWVDGLLPL
RTNLVPRA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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