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Report for CCDS22747.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22747.1 Public Mus musculus 8 Rpl13 23 108 98 CCDS HistoryNCBI Gene:270106Re-query CCDS DB by CCDS ID:22747.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22747.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000756.5 ENSMUSP00000000756.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000756.5Link to Ensembl Protein Viewer:ENSMUSP00000000756.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000000756Re-query CCDS DB by Protein ID:ENSMUSP00000000756
Original member Current member NCBI NM_016738.5 NP_058018.2 Accepted alive Link to Nucleotide Sequence:NM_016738.5Link to Protein Sequence:NP_058018.2Re-query CCDS DB by Nucleotide ID:NM_016738Re-query CCDS DB by Protein ID:NP_058018Link to BLAST:NP_058018.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058018.2 211 P47963 211 100% 0 0

Chromosomal Locations for CCDS 22747.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 123102659 123102762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123102845 123102986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123103183 123103356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123103898 123103954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 123105044 123105202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (636 nt):
ATGGCGCCCAGCCGGAATGGCATGATACTGAAGCCCCACTTCCACAAGGATTGGCAGCAGCGAGTGGACA
CTTGGTTCAACCAGCCGGCGCGCAAGATCCGCAGGCGCAAGGCCCGGCAGGCGAAAGCGCGTCGCATCGC
CCCTCGCCCCGCGTCCGGCCCCATCAGGCCCATCGTGAGGTGCCCTACAGTGAGATACCACACCAAGGTC
CGGGCTGGCAGGGGCTTCAGCCTGGAGGAGCTCAGGGTGGCTGGCATCCACAAGAAAGTGGCTCGCACCA
TCGGCATCTCTGTGGACCCGAGGAGGCGAAACAAGTCCACGGAGTCACTGCAGGCCAACGTGCAGCGCCT
GAAGGAGTACCGCTCCAAGCTCATCCTGTTCCCCAGGAAGCCTTCTGCTCCGAAGAAGGGAGACAGTTCT
GCTGAAGAACTTAAGCTGGCCACCCAGCTGACAGGACCTGTGATGCCCATCCGGAATGTGTACAAAAAGG
AAAAGGCCAGAGTTATCACAGAAGAAGAGAAGAACTTTAAGGCTTTTGCCAGTCTCCGAATGGCCCGTGC
CAATGCCCGACTCTTTGGCATCCGAGCAAAAAGGGCGAAGGAAGCTGCAGAGCAAGATGTTGAAAAGAAA
AAATAA

Translation (211 aa):
MAPSRNGMILKPHFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKV
RAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSS
AEELKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIRAKRAKEAAEQDVEKK
K


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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