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Report for CCDS24714.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24714.1 Public Mus musculus 11 G3bp1 23 108 98 CCDS HistoryNCBI Gene:27041Re-query CCDS DB by CCDS ID:24714.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24714.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018727.3 ENSMUSP00000018727.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018727.3Link to Ensembl Protein Viewer:ENSMUSP00000018727.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000018727Re-query CCDS DB by Protein ID:ENSMUSP00000018727
Original member NCBI NM_013716.2 NP_038744.1 Updated not alive Link to Nucleotide Sequence:NM_013716.2Link to Protein Sequence:NP_038744.1Re-query CCDS DB by Nucleotide ID:NM_013716Re-query CCDS DB by Protein ID:NP_038744
Current member NCBI NM_013716.3 NP_038744.1 Accepted alive Link to Nucleotide Sequence:NM_013716.3Link to Protein Sequence:NP_038744.1Re-query CCDS DB by Nucleotide ID:NM_013716Re-query CCDS DB by Protein ID:NP_038744Link to BLAST:NP_038744.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038744.1 465 P97855 465 100% 0 0

Chromosomal Locations for CCDS 24714.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 55485644 55485738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 55487479 55487560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 55489019 55489192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 55491964 55492054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 55493448 55493541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 55495253 55495451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 55496144 55496245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 55497651 55497762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 55497913 55498041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 55498558 55498667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 55499459 55499668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1398 nt):
ATGGTTATGGAGAAGCCTAGTCCCCTGCTGGTCGGGCGGGAGTTTGTGCGACAGTACTACACTCTGCTGA
ACCAGGCCCCGGACATGTTGCACAGATTTTATGGAAAGAACTCTTCCTATGCCCACGGGGGCTTGGATTC
CAACGGGAAGCCAGCAGATGCAGTCTACGGGCAGAAGGAAATCCACAGGAAAGTGATGTCACAAAACTTC
ACCAACTGCCACACCAAGATCCGCCACGTGGATGCTCACGCAACTCTGAATGACGGGGTGGTGGTCCAAG
TGATGGGGCTACTGTCCAACAACAACCAGGCTCTGCGGAGGTTCATGCAGACCTTTGTCCTTGCTCCTGA
GGGCTCTGTTGCCAACAAATTCTATGTTCACAACGACATCTTCAGGTACCAAGATGAGGTCTTCGGTGGC
TTTGTCACAGAGCCTCAAGAGGAATCCGAGGAAGAAGTAGAAGAACCTGAAGAAAGACAGCAGACACCAG
AGGTGGTGCCTGATGATTCTGGAACTTTCTATGATCAGACTGTCAGCAATGACTTGGAGGAGCATTTAGA
GGAGCCTGTAGTGGAACCAGAACCGGAGCCAGAGCCGGAGCCGGAGCCGGAACCTGTGTCCGACATTCAA
GAGGACAAGCCTGAGGCTGCATTGGAAGAAGCTGCTCCCGACGATGTGCAGAAGAGCACTTCCCCGGCCC
CGGCTGATGTGGCCCCGGCACAGGAGGACTTGAGGACGTTTTCTTGGGCATCTGTGACGAGTAAGAACCT
TCCTCCCAGTGGGGCTGTTCCAGTGACGGGGACACCACCTCATGTGGTCAAAGTGCCAGCGTCACAGCCC
CGTCCAGAATCTAAACCTGACTCTCAGATCCCACCACAAAGGCCTCAGAGAGATCAGAGAGTTCGAGAGC
AGCGAATCAATATCCCTCCTCAGAGAGGACCCCGACCAATCCGTGAGGCTGGTGAACCAGGAGATGTGGA
ACCTCGAAGGATGGTGAGGCACCCTGACAGTCACCAGCTCTTCATTGGGAACCTGCCACATGAGGTTGAC
AAGTCGGAACTGAAGGATTTTTTCCAAAATTTTGGCAATGTGGTGGAGCTGCGCATCAACAGTGGTGGGA
AGTTACCCAATTTCGGTTTTGTTGTGTTTGATGATTCTGAACCTGTTCAGAAGGTCCTTAGTAATAGGCC
CATCATGTTCCGAGGCGCGGTCCGCCTGAATGTGGAAGAGAAGAAGACTCGAGCTGCCAGAGAAGGCGAC
CGCAGGGATAACCGCCTTCGGGGACCTGGAGGCCCCCGTGGTGGGCCGAGTGGTGGGATGAGAGGCCCTC
CCCGCGGAGGCATGGTGCAGAAACCAGGCTTTGGCGTGGGCAGGGGGATTACAACTCCAAGGCAGTGA

Translation (465 aa):
MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYAHGGLDSNGKPADAVYGQKEIHRKVMSQNF
TNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYVHNDIFRYQDEVFGG
FVTEPQEESEEEVEEPEERQQTPEVVPDDSGTFYDQTVSNDLEEHLEEPVVEPEPEPEPEPEPEPVSDIQ
EDKPEAALEEAAPDDVQKSTSPAPADVAPAQEDLRTFSWASVTSKNLPPSGAVPVTGTPPHVVKVPASQP
RPESKPDSQIPPQRPQRDQRVREQRINIPPQRGPRPIREAGEPGDVEPRRMVRHPDSHQLFIGNLPHEVD
KSELKDFFQNFGNVVELRINSGGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGAVRLNVEEKKTRAAREGD
RRDNRLRGPGGPRGGPSGGMRGPPRGGMVQKPGFGVGRGITTPRQ


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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