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Report for CCDS36951.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36951.1 Public Mus musculus 14 Rp1l1 23 108 98 CCDS HistoryNCBI Gene:271209Re-query CCDS DB by CCDS ID:36951.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36951.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058229.5 ENSMUSP00000055449.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058229.5Link to Ensembl Protein Viewer:ENSMUSP00000055449.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000058229Re-query CCDS DB by Protein ID:ENSMUSP00000055449
Original member Current member NCBI NM_146246.3 NP_666358.2 Accepted alive Link to Nucleotide Sequence:NM_146246.3Link to Protein Sequence:NP_666358.2Re-query CCDS DB by Nucleotide ID:NM_146246Re-query CCDS DB by Protein ID:NP_666358Link to BLAST:NP_666358.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666358.2 1859 Q8CGM2 1859 100% 0 0

Chromosomal Locations for CCDS 36951.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 64021911 64022543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 64026066 64026207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 64027742 64032546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5580 nt):
ATGAACAGCACCCCAGGAGACACGAGGGATGCTCCTGCACCAAGCCACCCTGCACCAAGCCACCGGCAGT
GTCTCCTGCCCTCCGTGGCTCACACTCCCTCCGTTACTGAGGTGACACCGGCCAAGAAGATAACCTTCCT
CAAGCGAGGTGATCCCCAGTTTGCTGGGGTTCGCCTGGCTGTTCACCAGCGCACCTTCAAGACCTTCAGC
TCCCTAATGGATGAGCTGTCTCAGCGCATGCCTCTTTCCTTTGGGGTGCGTTCCGTCACCACACCCCGGG
GCTTGCATGGCCTCAGTGCCCTGGAGCAGCTGCAAGATGGGGGCTGCTACCTCTGCTCTGATAGGAAGCC
CCCCAAAACCTCCAGAGAGCCAGGCCGGCTTCAACGGAAAAGCCCCTCTGCTGGGCAGGCACAGGTTTTC
CAAGGTGGGCATGAAGCTCCAGAAACATCCTATTCCTGGAAAGGTCCCGTGGCCCCAAGGAGGCTGACTC
TGGTGAAGAACGGGGATCCTAGACGCCAGCAGACAGTGGTTCTCAGTCACAAGAATACCAGGAGTCTGGC
AGCTTTCCTCGGCAAAGCCTCTGAGCTTCTGCGCTTTCCCGTCAAGCAGGTGTACACGACCCGGGGGAAG
AAGGTGGACTCTCTGCAGACACTCCTTGATGGCCCCTCTGTGCTGGTATGTGCTGGGAACGAGGCCTTCA
GATGTCTGGAGATGGAAAATGACAGAGGAAACAGGACCAGAAAGTTATCTAGTGTGACTGCGAGGAGTGA
ACGTGGTTGCTGGGGACCAAACGCCAAACAAAGTGTCATACACTCGAGGGGCAGGTCTGGCGGCAAGCTG
CGGCAGGTTTCCTTGACGTCAGAGAGGTCTGGTCTCAGTGACCATCCAGCATCCGGTCATCGAGCCTGGG
CAGGCCCTGCTTTGGACAGGTGCCCTCAGGACATGCCTGTCCCACCTGGTTCCTTGGTGGCTGCTGATGA
TGTGGAGAAGAAGGTCTGCATGAATGAGGACGGCAGTCTGTCTGTGGAGATGAAAGTCCGCTTCCAACTT
CTGGGCGAGGACACCCTGCGGTGGTCCCAAAGGGTGGGGCAGGCCAGTGTCTTCACAGCAGCCAGTGGAA
AGGGTCAGGACCCGAGGGAGGCTGACAGGTTCTGTTGCAGACAGGAGGGCTACCCTTGGGGCATCTTAAA
GCCTGGGGCACAGGGACTGGGTTCCTATGATGGAGGATGCCAGGAAGCCTTTGATGTGGGCCAAAAGTCA
CAACCCAGCTATGACATATGGAGGAACCCCCTGGCCACCCCTGAGGGCACAGGACCAACACCTCGAAGGA
GATGGGGTCTGGCTAAGCTCTCTGGATGCAAGAGCCACTGGAGACAGGAGGCCAATCATAGGAAAGGGCA
TGACAAGGATAATCTCAGCCGAGTCTCAACTCCCAGGCACCCTAGAAGTGTCCAGCCAGGCTCCTGCTGT
CCTTGGACTCCAGACGGCGATACAGGCAGTGACACCTTGCATCCAGTCTCCTCAGCTTCTTCCCACAATG
AGACTGACCTGGAATCTGGTGAAGGCCTCTGCCTAGAGGACACAGGACCCCATGGCTCGAGACCTGAGAC
CCAAAGTACAGAAAGGGCCCTGTCTGATACATCAGTCAGTGCCAAGTCTCGTGAGGAGTCTAGTGAAGGT
GGTGGTCAGCTCCACAGAAGCTCAAGCCAGGCAAGGGTCATGGCTTCCCGGGAGCAAGTCACCAAGGGTG
ACAACCCCTGTATTTCCACCCAGAGTCACTTACCTTTGAATCACATGGGTCTTCAGACAGAGAAGTATAG
ACAGGGCACCAGGGGTTGGGAGGTCAGCGGAGAGCCTGAACTGAGACTGGCCCTGGTTCCAGGCCATTCT
GGCTCTCAGGACACACAGAGAGATGCTCTCCCAGCTCCTGCCTGTGCCCCAGCCCAATGGAGGCAGAGAA
AGCAGAAGAGGCCAGCTAGTGTTGAGTGTTTGCCCAGTGTCTCTGTCCCTTACCAAGTGGCTCAGAAAGG
CCATGCCAGGCAGGATCACTATTACAGGGACACTCAATCCTCACTGGACACAGCCTTGCAAATGCCAATG
CCTCAGGAAAGAGAACAGGCCTGCCCAGGAAGCCCAGCACCACAATCTCCTTCAAATTCACCCAGTGCTG
GGAATCAAGCCTCTGAGGACCTGAGATCCCCATTCTCTAGTTCTCTTGATCTTCAGGAACCACAAGCCAC
CAGCAAAGCCACCACCATCGCCGTGAGTGGCTCAGACTGTGTTTGCCACAGCACTCGCTCTGTGGAGCCA
GCAGGAGACACCAAGTGCCAGGCTCACTCATCAACTCCCACACCTGCCCACAGAGGAGAGCTTGGTTGCC
TGTGGGACAAGGCAGGGACCACCCCTGAGCCTTTCTCATTCTCTGTGCTACTGGACAGATGCCCTGAGGC
AGATGATCCAAGAACCTACCACGATTGCTGCTGCTTACAGGCTGTGCCATCTTCTCCCCTTGCAGCCCCC
AGTGGTCAGACACAAACCTCCATCTCTGAGGCCTGCTTAGGGGGCAGTAGTTTCTGCCCAACTCCACCCA
AGGAGCAAACATGCTTTGGGAGGGAGTCTGCAAGCAACGGTAGTACCAGCAGTGGTCACAGTCGAGCCGA
TGGCTTTGCCGGGCCCAGGAGGACTCTGCTGGTGAAGTCCCCCGGTGTCAGGGGAAGCCTTGAGGAGCGG
GAAGCAGATGGTGGTGTGACGCCGAGCGCTCTGCCTTACGCCTCTCCAGATGCTGTGGTTCGTGAGTGGC
TAGGCAACATCCCAGAAAAGCCGGTACTCATGACGTATGAGATGGCAGACGAGAACACAGAGGTGCCCAG
TGATGGCCCAGAAGGTCCCAAGGAGGACTCTTTGAAAGTCCTGGGGGAACCGTCTCAGGCCAAACAGCAG
CCCCCGGAAGGGGCTACCAATGAGCACCCAGAGCCAGCGGGAGTCCTCTCAGGACCTGGCTCTGTGTGCT
GCAGACTGGGAGGTGATCTGCATCCAGATGCAACATCAGGTGAAAGGCTCAAGGCTCCTGCAGAAGCTGG
AATAGGAGAAGGGGCCAGAGTGGACCATGGTGTAAGCTTATGTGCACTCCCCACTAAGGTCGCAGCCTCT
ACACAGATCATGAAGGCCCTGCTGGGCTCCAAGCCAGGTCGGCCCAGCAGTCTACCAGAGGTCTCTAGCA
CAGTAGCCCAGAGGCTCAGTAGCTCTGCTGGGGCCTTCATTGCCTGCCTTGCCAGGCTCCATTTCTTTGA
TGAGAGTCTGGGGCCTCTGGATGGCAAAGTGAGGCTTGAAGAGTCCCCTAAGTACCAGGAGATGCTGAGA
CTCTTCCAGACGCTGTGGCCTGGGAGTGAGCTTTGGCAAGGCCAGCTGGACTTCAGCCTCAGGAAGCTCA
CTTCGCACCAGGCTCTGCTAGGGACTGAGGACTTCACACCCACCTCCTCCTCCGGCGTGGATGTGAGCAG
TGGTTCTGGAGGCTCAGGGGAGAGCAGCGTGCCCTGTGTCATGGATAACACCCTGGCTCCCGAGAAGAGA
GATTTGCCCTTGAAAATCCCTTCTCAAAGACCTGATTCCAGGAACCAGGGGTACCCAGAACTAGTGGGTC
ATTCCACAGTCTCATCTGTCTCCCAGGTGAGGGCTTGTGCCACCGGTGGGGAGGAGACAGGTAAAGGAGG
CAGGAAGCAGACATGGGGCAATGCCCCAGAACAATCGGTCCATAGCACGATGCTGGAAGGTGATGCACTG
TCAGAAGAAACAGAAGGGAGAGTGAGAGAAAGGCTACAGGAAAATAGTGTCCATGGAAAGGGGCTGCCAG
AAGAAGGGGTTAGGGTCTGCAGTCAGGAAATGCTTGCAGCTGGCTCTCAGGATGGAGCAGGTTCACCAGA
AGATACCAGAGTGCCAACAGATGAAGCAGGAGCTGATGCGGCCTCTGGAGGACTGTGGCCCCTAGATGGG
AGAGAGGAGCCCACAGAGTCCCCTCAGCATTTCAGCGAGAGCAACTCAAGGGTTCGTGAGCATCAAAGCG
CTCACAAACTGGAGCTAGGGTTGGAAGAGGTGTCCAGATTGGATGCAAGGGGCTGCAAGCAAGCCTGCAT
CAAGGCCAGCTCAGGAACCATGGCTCACAAGGGATCTCTGGACCCTGACCCAATCTGGGTGTCCAAGCTG
CTGAAGAAGATAGAGAAAGCCTTCATGGCTCACCTGGCTGATGCCACAGCCGAACTCCGAGCCCGATGGG
ATCTTCATGACAATCACCTGCTGGACCAGATGGTGACCGAGCTGGAGCAGGATGTGGGCCGACGGCTGCA
GGCAAGCACTGTTATGGAAGTCAGGAAGATCCAGAGCCGGGCAGGGAGGATGGTTCCAGAACCACCCCGG
GAAGCCCTCAGAGGCCAGGCTTCTCTACAGACAGAGCAGCGCAGGCGTCGCCTTCAGGGCTTGCGCAACT
TCTCAGCCGTCCCTGGCCAGGGTCCCCTCTCCCTCACCCTGGAGGATGGGCCCACACTCAAAACAGCCTT
AGGGACCAAGTCAGGTGCAGAGCCTGCGGAGGATGAGTTCTGTCCCTGTGAAATCTGTCTGAAGAAGAAG
AGGACCCCTAGATTCCCAAAGGATGCTGCAACAGTCTCTGGTGCTCCTGTCAGAAAGGCCTTTGACCTGC
AGCAAATTCTACAGAGCAAGAAAGGAGGAAGCAGCAATAGAGAGGCCATGGAGGTGGCCCCTCAGAGGAC
AGGAAGGATGTTGTCTCAGGAGGACCTCGGAACTGTCCAGGGAGCTGATGAGAAGCAAGGGCTTGGGGTG
GCTGAGGGAGAGGAGGGGGAAGGGAAACAGAGGCTGAGAGCAGAGGAGGATCCCGAGATTTTGAAAACAG
AAGGATCTGGTTGCTGTGCACCAGAAGAGGATGAAGCCACTGAGGAAGATGGGGAAATCTGCATCGGCAC
TGCCCAAGAAAGCCAGCAGTTAGAGGGGACTGAGATGGGCAAGGAGGGAACCCTGCCCCAGAGCTTTAGA
GATGGAGGCACTTTAGAGGCTCCAGCAAGACAGGGTACCCACTCTGTGGAGATTCAGGAAGCTTCCAGAG
AAAGACAGCAGGAGGTAGAAGGAAGACATCAAGATGTAAAGGAAGACAGTCCTTGGGTGAGCTCAGGAGA
GAGCCAGGGAAGGGTGGGTTCTGAAAACACCAGCCTAGACCAAGAGGGGAGGCTCCTGAACCACCATCAA
AGGCCAGGCCCCCAGAGCCACCACACAGCATGCTCCTCCAGGGCATTGTCTCTGGACAACAGTTCACAGG
TGTCTCAGAAGGGCTCAGATGGAGACTTAACAAGTGGAGACCTCAAGTGCACCAAAGCCAAGAACAGCAG
GGTATTGCATGCAGAGAAGAAAGTCCCCGTGATGTATCCAGAGAGATCCTCTTCTGAGCAAGAAGTCCCC
TCCAGCCCAAGGCTTCCAAAGCAAGGGAAAGGGGAAGATGAAGGATCAGCTGGAAGCTTGGCTTGTACCC
AGGTTGGGGGCAAGGTAGATGGCTTTGGCCAGGATGACTTAGATTTCTAG

Translation (1859 aa):
MNSTPGDTRDAPAPSHPAPSHRQCLLPSVAHTPSVTEVTPAKKITFLKRGDPQFAGVRLAVHQRTFKTFS
SLMDELSQRMPLSFGVRSVTTPRGLHGLSALEQLQDGGCYLCSDRKPPKTSREPGRLQRKSPSAGQAQVF
QGGHEAPETSYSWKGPVAPRRLTLVKNGDPRRQQTVVLSHKNTRSLAAFLGKASELLRFPVKQVYTTRGK
KVDSLQTLLDGPSVLVCAGNEAFRCLEMENDRGNRTRKLSSVTARSERGCWGPNAKQSVIHSRGRSGGKL
RQVSLTSERSGLSDHPASGHRAWAGPALDRCPQDMPVPPGSLVAADDVEKKVCMNEDGSLSVEMKVRFQL
LGEDTLRWSQRVGQASVFTAASGKGQDPREADRFCCRQEGYPWGILKPGAQGLGSYDGGCQEAFDVGQKS
QPSYDIWRNPLATPEGTGPTPRRRWGLAKLSGCKSHWRQEANHRKGHDKDNLSRVSTPRHPRSVQPGSCC
PWTPDGDTGSDTLHPVSSASSHNETDLESGEGLCLEDTGPHGSRPETQSTERALSDTSVSAKSREESSEG
GGQLHRSSSQARVMASREQVTKGDNPCISTQSHLPLNHMGLQTEKYRQGTRGWEVSGEPELRLALVPGHS
GSQDTQRDALPAPACAPAQWRQRKQKRPASVECLPSVSVPYQVAQKGHARQDHYYRDTQSSLDTALQMPM
PQEREQACPGSPAPQSPSNSPSAGNQASEDLRSPFSSSLDLQEPQATSKATTIAVSGSDCVCHSTRSVEP
AGDTKCQAHSSTPTPAHRGELGCLWDKAGTTPEPFSFSVLLDRCPEADDPRTYHDCCCLQAVPSSPLAAP
SGQTQTSISEACLGGSSFCPTPPKEQTCFGRESASNGSTSSGHSRADGFAGPRRTLLVKSPGVRGSLEER
EADGGVTPSALPYASPDAVVREWLGNIPEKPVLMTYEMADENTEVPSDGPEGPKEDSLKVLGEPSQAKQQ
PPEGATNEHPEPAGVLSGPGSVCCRLGGDLHPDATSGERLKAPAEAGIGEGARVDHGVSLCALPTKVAAS
TQIMKALLGSKPGRPSSLPEVSSTVAQRLSSSAGAFIACLARLHFFDESLGPLDGKVRLEESPKYQEMLR
LFQTLWPGSELWQGQLDFSLRKLTSHQALLGTEDFTPTSSSGVDVSSGSGGSGESSVPCVMDNTLAPEKR
DLPLKIPSQRPDSRNQGYPELVGHSTVSSVSQVRACATGGEETGKGGRKQTWGNAPEQSVHSTMLEGDAL
SEETEGRVRERLQENSVHGKGLPEEGVRVCSQEMLAAGSQDGAGSPEDTRVPTDEAGADAASGGLWPLDG
REEPTESPQHFSESNSRVREHQSAHKLELGLEEVSRLDARGCKQACIKASSGTMAHKGSLDPDPIWVSKL
LKKIEKAFMAHLADATAELRARWDLHDNHLLDQMVTELEQDVGRRLQASTVMEVRKIQSRAGRMVPEPPR
EALRGQASLQTEQRRRRLQGLRNFSAVPGQGPLSLTLEDGPTLKTALGTKSGAEPAEDEFCPCEICLKKK
RTPRFPKDAATVSGAPVRKAFDLQQILQSKKGGSSNREAMEVAPQRTGRMLSQEDLGTVQGADEKQGLGV
AEGEEGEGKQRLRAEEDPEILKTEGSGCCAPEEDEATEEDGEICIGTAQESQQLEGTEMGKEGTLPQSFR
DGGTLEAPARQGTHSVEIQEASRERQQEVEGRHQDVKEDSPWVSSGESQGRVGSENTSLDQEGRLLNHHQ
RPGPQSHHTACSSRALSLDNSSQVSQKGSDGDLTSGDLKCTKAKNSRVLHAEKKVPVMYPERSSSEQEVP
SSPRLPKQGKGEDEGSAGSLACTQVGGKVDGFGQDDLDF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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