NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS6746.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6746.1 Public Homo sapiens 9 INVS 24 110 108 CCDS HistoryNCBI Gene:27130Re-query CCDS DB by CCDS ID:6746.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6746.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262457.7 ENSP00000262457.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000262457.7Link to Ensembl Protein Viewer:ENSP00000262457.2Re-query CCDS DB by Nucleotide ID:ENST00000262457Re-query CCDS DB by Protein ID:ENSP00000262457
Original member Current member NCBI NM_014425.5 NP_055240.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014425.5Link to Protein Sequence:NP_055240.2Re-query CCDS DB by Nucleotide ID:NM_014425Re-query CCDS DB by Protein ID:NP_055240Link to BLAST:NP_055240.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055240.2 1065 Q9Y283-1 1065 100% 0 0

Chromosomal Locations for CCDS 6746.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 100104522 100104627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100126383 100126549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100226062 100226235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100229660 100229827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100240060 100240240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100242570 100242679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100246616 100246787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100252283 100252438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100252907 100253136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100264822 100264928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100272864 100273076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100284320 100284603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100292326 100293043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100296917 100297146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100297936 100298010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100300568 100300674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3198 nt):
ATGAACAAGTCAGAGAACCTGCTGTTTGCTGGTTCATCATTAGCATCACAAGTCCATGCTGCTGCCGTTA
ATGGAGATAAGGGTGCTCTACAGAGGCTCATCGTAGGAAACTCTGCTCTTAAAGACAAAGAAGATCAGTT
TGGGAGAACACCACTTATGTATTGCGTGTTGGCTGACAGATTGGATTGTGCAGATGCTCTTCTGAAGGCA
GGAGCAGATGTGAATAAAACTGACCATAGCCAGAGAACAGCCCTCCATCTTGCAGCCCAGAAGGGAAATT
ATCGTTTCATGAAACTCTTACTTACACGCAGAGCAAACTGGATGCAAAAGGATCTGGAAGAGATGACTCC
TTTGCACTTGACCACCCGGCACAGGAGCCCTAAGTGTTTGGCACTTCTGCTGAAGTTTATGGCACCAGGA
GAAGTGGATACACAGGATAAAAACAAGCAAACAGCTCTGCATTGGAGTGCCTACTACAATAACCCTGAGC
ATGTGAAGCTGCTCATCAAGCATGATTCTAACATTGGGATTCCTGATGTTGAAGGCAAGATCCCACTTCA
CTGGGCAGCCAACCATAAAGATCCAAGTGCTGTTCACACAGTGAGATGCATTCTGGATGCTGCTCCAACA
GAGTCTTTACTGAACTGGCAAGACTACGAGGGTCGAACTCCTCTTCACTTTGCAGTTGCTGATGGGAATG
TGACCGTGGTTGATGTCTTGACCTCATATGAAAGCTGCAATATAACGTCTTATGATAACTTATTTCGAAC
CCCACTGCACTGGGCAGCTTTATTAGGCCATGCACAGATTGTCCATCTCCTTTTAGAAAGAAATAAGTCT
GGAACTATCCCATCTGACAGCCAAGGAGCCACACCTTTGCACTATGCTGCTCAGAGTAACTTTGCTGAAA
CGGTTAAAGTGTTTTTAAAACATCCTTCAGTGAAAGATGATTCAGACCTGGAAGGAAGAACATCCTTTAT
GTGGGCAGCTGGCAAAGGCAGTGATGATGTCCTTAGAACTATGCTGAGCTTAAAATCGGACATAGATATT
AACATGGCTGACAAATATGGAGGTACAGCTTTGCATGCTGCTGCTCTTTCTGGCCATGTCAGCACCGTGA
AGTTATTACTGGAAAATAATGCTCAAGTAGATGCTACTGATGTTATGAAACATACTCCACTTTTCCGAGC
CTGTGAGATGGGACACAAAGATGTGATTCAGACACTCATTAAAGGTGGAGCAAGGGTAGATCTAGTTGAC
CAAGATGGACATTCTCTTCTACATTGGGCAGCACTGGGAGGAAATGCTGATGTTTGCCAGATATTAATAG
AAAATAAGATCAATCCAAATGTCCAGGATTATGCAGGAAGAACCCCTTTGCAGTGTGCAGCATATGGAGG
CTATATCAACTGCATGGCAGTTCTCATGGAAAACAATGCAGACCCTAACATTCAAGACAAAGAGGGAAGA
ACAGCTTTGCATTGGTCCTGCAACAATGGATACCTTGATGCCATTAAATTACTGCTAGACTTTGCTGCTT
TCCCTAATCAGATGGAAAACAATGAAGAGAGATACACACCCCTTGATTATGCTTTGCTTGGTGAGCGCCA
TGAAGTGATCCAGTTCATGTTGGAGCACGGTGCCCTGTCCATCGCAGCCATACAAGACATCGCCGCCTTC
AAAATCCAAGCTGTCTACAAAGGGTACAAGGTCAGAAAAGCCTTCCGAGACAGGAAAAATCTCCTCATGA
AGCATGAACAGTTGAGAAAAGATGCTGCTGCCAAAAAGCGAGAGGAAGAAAACAAACGAAAAGAGGCAGA
ACAGCAAAAAGGAAGGCGGAGCCCAGATTCCTGCAGACCCCAGGCCCTTCCCTGTCTGCCTAGCACCCAG
GATGTGCCCAGCAGGCAGAGCCGGGCCCCCAGCAAGCAGCCTCCTGCTGGCAACGTGGCCCAAGGCCCTG
AGCCAAGAGACAGCAGAGGATCTCCAGGAGGGTCTCTAGGCGGAGCCCTCCAGAAGGAGCAGCATGTTTC
CTCAGATTTGCAGGGAACAAACTCCAGAAGGCCAAATGAAACAGCCAGAGAACATTCTAAAGGCCAATCT
GCTTGTGTCCACTTCAGACCCAATGAAGGCAGTGATGGAAGCAGGCATCCAGGAGTTCCCTCTGTTGAGA
AGTCCAGAGGTGAGACAGCTGGCGATGAGCGGTGTGCAAAGGGGAAAGGCTTCGTGAAGCAGCCCTCCTG
TATCAGGGTGGCTGGGCCTGATGAGAAAGGAGAGGACTCCAGGCGGGCAGCTGCAAGCCTTCCACCGCAC
GATAGCCACTGGAAGCCCAGCAGGCGGCATGACACAGAACCCAAGGCCAAATGTGCCCCCCAGAAAAGGC
GCACTCAAGAGCTCAGAGGAGGAAGGTGCTCTCCGGCTGGTTCTAGCCGCCCTGGCAGTGCCCGGGGGGA
GGCGGTCCATGCTGGGCAGAATCCTCCCCACCATCGTACACCAAGAAACAAAGTGACACAAGCCAAGCTC
ACAGGAGGGCTCTATTCACATTTGCCACAGAGCACAGAGGAGTTGAGGTCAGGAGCTAGGAGGCTGGAGA
CATCTACCCTGTCCGAGGACTTTCAGGTATCTAAGGAGACTGATCCAGCACCTGGTCCCCTCTCTGGGCA
GAGTGTGAATATTGACCTTCTCCCCGTAGAGCTCCGACTGCAGATAATTCAGAGAGAACGAAGGAGGAAG
GAGCTGTTTCGCAAAAAGAACAAGGCAGCAGCAGTCATCCAGCGCGCCTGGCGAAGCTACCAGCTCAGGA
AGCACCTGTCCCACCTTCGGCATATGAAGCAGCTTGGAGCTGGAGATGTGGACAGATGGAGGCAAGAGTC
TACAGCATTGCTCCTCCAGGTTTGGAGGAAGGAACTGGAACTAAAATTCCCCCAAACCACTGCAGTAAGC
AAGGCCCCCAAGAGTCCATCCAAGGGCACCTCAGGCACAAAGTCCACCAAGCACTCAGTGCTTAAGCAAA
TCTATGGTTGTTCTCACGAAGGGAAAATACATCATCCTACAAGATCTGTAAAAGCCTCTTCTGTGCTGCG
TCTCAACTCAGTGAGCAACCTACAGTGTATACATCTCCTTGAGAACAGTGGAAGATCAAAGAACTTTTCT
TATAACCTGCAATCAGCTACTCAGCCAAAAAACAAAACAAAACCTTGA

Translation (1065 aa):
MNKSENLLFAGSSLASQVHAAAVNGDKGALQRLIVGNSALKDKEDQFGRTPLMYCVLADRLDCADALLKA
GADVNKTDHSQRTALHLAAQKGNYRFMKLLLTRRANWMQKDLEEMTPLHLTTRHRSPKCLALLLKFMAPG
EVDTQDKNKQTALHWSAYYNNPEHVKLLIKHDSNIGIPDVEGKIPLHWAANHKDPSAVHTVRCILDAAPT
ESLLNWQDYEGRTPLHFAVADGNVTVVDVLTSYESCNITSYDNLFRTPLHWAALLGHAQIVHLLLERNKS
GTIPSDSQGATPLHYAAQSNFAETVKVFLKHPSVKDDSDLEGRTSFMWAAGKGSDDVLRTMLSLKSDIDI
NMADKYGGTALHAAALSGHVSTVKLLLENNAQVDATDVMKHTPLFRACEMGHKDVIQTLIKGGARVDLVD
QDGHSLLHWAALGGNADVCQILIENKINPNVQDYAGRTPLQCAAYGGYINCMAVLMENNADPNIQDKEGR
TALHWSCNNGYLDAIKLLLDFAAFPNQMENNEERYTPLDYALLGERHEVIQFMLEHGALSIAAIQDIAAF
KIQAVYKGYKVRKAFRDRKNLLMKHEQLRKDAAAKKREEENKRKEAEQQKGRRSPDSCRPQALPCLPSTQ
DVPSRQSRAPSKQPPAGNVAQGPEPRDSRGSPGGSLGGALQKEQHVSSDLQGTNSRRPNETAREHSKGQS
ACVHFRPNEGSDGSRHPGVPSVEKSRGETAGDERCAKGKGFVKQPSCIRVAGPDEKGEDSRRAAASLPPH
DSHWKPSRRHDTEPKAKCAPQKRRTQELRGGRCSPAGSSRPGSARGEAVHAGQNPPHHRTPRNKVTQAKL
TGGLYSHLPQSTEELRSGARRLETSTLSEDFQVSKETDPAPGPLSGQSVNIDLLPVELRLQIIQRERRRK
ELFRKKNKAAAVIQRAWRSYQLRKHLSHLRHMKQLGAGDVDRWRQESTALLLQVWRKELELKFPQTTAVS
KAPKSPSKGTSGTKSTKHSVLKQIYGCSHEGKIHHPTRSVKASSVLRLNSVSNLQCIHLLENSGRSKNFS
YNLQSATQPKNKTKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH