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Report for CCDS39947.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39947.1 Public Mus musculus 7 Rps11 23 108 98 CCDS HistoryNCBI Gene:27207Re-query CCDS DB by CCDS ID:39947.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39947.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003521.9 ENSMUSP00000003521.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003521.9Link to Ensembl Protein Viewer:ENSMUSP00000003521.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000003521Re-query CCDS DB by Protein ID:ENSMUSP00000003521
Original member Current member NCBI NM_013725.4 NP_038753.1 Accepted alive Link to Nucleotide Sequence:NM_013725.4Link to Protein Sequence:NP_038753.1Re-query CCDS DB by Nucleotide ID:NM_013725Re-query CCDS DB by Protein ID:NP_038753Link to BLAST:NP_038753.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038753.1 158 P62281 158 100% 0 0

Chromosomal Locations for CCDS 39947.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 45122435 45122558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45122829 45122958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45123163 45123238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45123419 45123550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45124297 45124311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (477 nt):
ATGGCGGACATTCAGACGGAGCGTGCTTACCAAAAGCAGCCTACGATCTTTCAAAACAAGAAGCGGGTTC
TGCTGGGAGAAACCGGCAAGGAAAAACTCCCTCGGTACTACAAGAATATCGGTCTAGGCTTCAAGACGCC
TAAAGAGGCTATTGAGGGTACCTACATAGACAAGAAATGCCCCTTCACTGGTAACGTCTCCATCCGAGGT
CGGATCCTGTCTGGTGTCGTGACGAAGATGAAGATGCAGAGGACCATTGTCATCCGCCGGGACTATCTCC
ATTACATCCGAAAGTACAATCGCTTTGAGAAGCGTCACAAGAACATGTCTGTGCACCTGTCCCCCTGTTT
CAGGGATGTACAGATCGGAGACATTGTCACAGTTGGAGAGTGCAGGCCCCTGAGCAAGACTGTGCGATTC
AATGTGCTCAAGGTCACCAAGGCTGCTGGCACCAAGAAGCAGTTTCAGAAGTTCTAA

Translation (158 aa):
MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRG
RILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRF
NVLKVTKAAGTKKQFQKF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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