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Report for CCDS25227.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25227.1 Public Mus musculus 11 Mrps23 23 108 98 CCDS HistoryNCBI Gene:64656Re-query CCDS DB by CCDS ID:25227.1Re-query CCDS DB by GeneID:64656See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25227.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024486.13 ENSMUSP00000024486.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024486.13Link to Ensembl Protein Viewer:ENSMUSP00000024486.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000024486Re-query CCDS DB by Protein ID:ENSMUSP00000024486
Original member Current member NCBI NM_024174.6 NP_077136.2 Accepted alive Link to Nucleotide Sequence:NM_024174.6Link to Protein Sequence:NP_077136.2Re-query CCDS DB by Nucleotide ID:NM_024174Re-query CCDS DB by Protein ID:NP_077136Link to BLAST:NP_077136.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077136.2 177 Q8VE22 177 100% 0 0

Chromosomal Locations for CCDS 25227.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 88204442 88204485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 88205189 88205359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 88209853 88209930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 88210104 88210230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 88210650 88210763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (534 nt):
ATGGCGGGGAGCCGGCTGGAGACGGTGGGGAGCGTGTTCTCCCGGACGAGGGATCTGATGCGGGCCGGGG
TGTTGAAAGAGAAGCCACTGTGGTATGACATATATAAGGCCTTTCCACCCCTGAGAGAGCCTGTCTTCCG
AAGGCCCCGCTTGCGATACGGCAAAGCCAAAGCTGACATCCAGGACATCTTTTACCAGGAGGATCAGATT
CGAGCGAAATTCTTTGCAACCTATGGATCTGGTCAGAAAGCTTTTGATCTCTTCAACCCAAACTTCAAGT
CTACCTGTCAGCGGTTTGTGGAGAAGTACACAGAGCTTCAGAATCTTGGAGAAACAGATGAAGAGAAGTT
ATTTGTAGAAACGGGGAAGGCTCTGTTGGCAGAAGGCATCATTTTAAGAAGAGTTCGAGAAGCAAGGACT
GTCAGCGTGAGACTCCAAGCTTCATCAGAAGGACATGAGCCTCAGGAAGACGATGACCTGGCGCAGCGGG
GGCAGGTGAAGCAGGAGCCAGAAACAGCCCCGTCCCCTCCCTGA

Translation (177 aa):
MAGSRLETVGSVFSRTRDLMRAGVLKEKPLWYDIYKAFPPLREPVFRRPRLRYGKAKADIQDIFYQEDQI
RAKFFATYGSGQKAFDLFNPNFKSTCQRFVEKYTELQNLGETDEEKLFVETGKALLAEGIILRRVREART
VSVRLQASSEGHEPQEDDDLAQRGQVKQEPETAPSPP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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