NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22959.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22959.1 Public Mus musculus 9 Srpra 23 108 98 CCDS HistoryNCBI Gene:67398Re-query CCDS DB by CCDS ID:22959.1Re-query CCDS DB by GeneID:67398See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 22959.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034541.11 ENSMUSP00000034541.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034541.11Link to Ensembl Protein Viewer:ENSMUSP00000034541.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000034541Re-query CCDS DB by Protein ID:ENSMUSP00000034541
Original member Current member NCBI NM_026130.1 NP_080406.1 Accepted alive Link to Nucleotide Sequence:NM_026130.1Link to Protein Sequence:NP_080406.1Re-query CCDS DB by Nucleotide ID:NM_026130Re-query CCDS DB by Protein ID:NP_080406Link to BLAST:NP_080406.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080406.1 636 Q9DBG7 636 100% 0 0

Chromosomal Locations for CCDS 22959.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 35211289 35211405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35211992 35212075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35212348 35212511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35212720 35212880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35213130 35213286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35213383 35213536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35213747 35213835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35213937 35214055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35214187 35214273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35214560 35214732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35214818 35215031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35215467 35215630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35215715 35215813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35215938 35216066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1911 nt):
ATGCTTGACTTCTTCACCATCTTCTCGAAGGGCGGGCTTGTGCTCTGGTGTTTCCAGGGCGTGAGCGACT
CGTGCACCGGGCCCGTCAACGCGTTGATTCGTTCCGTACTGCTGCAGGAACGGGGCGGTAACAACTCTTT
CACTCATGAGGCTCTCACACTCAAGTATAAACTGGACAACCAGTTTGAGCTGGTGTTTGTGGTTGGCTTT
CAGAAGATCCTCACGCTGACCTATGTAGACAAGTTGATAGATGATGTGCACCGACTGTTCCGGGATAAGT
ATCGCACAGAGATCCAACAACAGAGTGCTTTAAGTCTATTGAATGGCACATTTGATTTCCAAAATGACTT
CCTGCGGCTCCTTCGTGAAGCAGAGGAGAGCAGTAAGATCCGTGCTCCCACTACCATGAAGAAATTTGAA
GATTCTGAAAAAGCTAAGAAACCTGTGAGGTCCATGATTGAAACACGGGGGGAAAAGACCAAGGAAAAAG
CAAAAAACAACAAAAAAAGGGGGGCCAAAAAGGAAGGTTCTGATGGCACTTTGGCTACTAGCAAAACAGC
CCCTGCAGAAAAGTCAGGTCTCTCAGCGGGACCTGAGAATGGAGAACTTTCCAAAGAGGAGCTGATCCGT
AGGAAGAGAGAGGAGTTCATTCAGAAGCATGGCAAGGGTCTGGACAAATCCAGTAAATCTACAAAGTCAG
ATACTCCAAAGGAGAAGGGCAAAAAAGCACCCCGGGTGTGGGAACTAGGTGGCTGTGCTAACAAGGAAGT
CTTGGATTACAGTACTCCCACCACCAATGGAACTCCAGAGGCAGCCCTTTCTGAAGATATCAACTTGATT
CGAGGAACTGGGCCTGGGGGACAGCTTCAAGATCTGGATTGCAGCAGCTCAGATGATGAAGGGGCCACTC
AAAATACCAAGCCTAGTGCTACCAAGGGAACTCTGGGTGGCATGTTTGGGATGCTGAAGGGTCTGGTGGG
TTCCAAGAGCTTGAGTCGAGAAGACATGGAATCTGTGCTAGACAAGATGCGTGATCATCTCATTGCTAAG
AATGTGGCTGCTGACATTGCTGTCCAGCTCTGTGAATCTGTTGCCAACAAATTAGAAGGGAAAGTGATGG
GGACATTTAGCACTGTGACTTCAACAGTCAAGCAAGCTCTCCAGGAATCTCTAGTACAGATCCTACAGCC
ACAGCGTCGTGTAGACATGCTCCGGGATATCATGGATGCCCAACGTCGCCAGCGCCCTTATGTTGTTACC
TTCTGTGGTGTTAATGGAGTAGGGAAGTCTACCAATCTTGCCAAGATTTCCTTTTGGCTTTTAGAGAATG
GCTTTAGTGTCCTCATTGCTGCCTGTGATACATTTCGGGCTGGGGCTGTTGAGCAGCTTCGTACACACAC
CCGGCGCCTGACTGCCCTCCATCCCCCCGAGAAGCATGGTGGCCGTACGATGGTGCAGTTGTTTGAAAAA
GGCTATGGCAAGGACGCTGCTGGCATTGCCATGGAAGCCATTGCCTTTGCACGTAACCAAGGCTTTGATG
TGGTGCTGGTAGACACTGCTGGCCGCATGCAAGACAATGCCCCTCTGATGACTGCCCTGGCCAAACTCAT
TACTGTCAATACACCTGACTTGGTGCTGTTTGTAGGGGAGGCCTTAGTAGGCAACGAAGCTGTGGATCAA
CTGGTCAAGTTCAACAGAGCCTTGGCTGACCATTCTATGGCTCAGACACCTCGGCTCATTGATGGCATTG
TTCTTACCAAATTTGACACCATTGATGACAAGGTGGGAGCTGCTATCTCTATGACATACATCACAAGCAA
ACCCATCGTCTTTGTGGGTACTGGCCAGACCTACTGTGACCTACGCAGTCTTAATGCCAAGGCTGTGGTG
GCTGCCCTCATGAAGGCTTAA

Translation (636 aa):
MLDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGGNNSFTHEALTLKYKLDNQFELVFVVGF
QKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRLLREAEESSKIRAPTTMKKFE
DSEKAKKPVRSMIETRGEKTKEKAKNNKKRGAKKEGSDGTLATSKTAPAEKSGLSAGPENGELSKEELIR
RKREEFIQKHGKGLDKSSKSTKSDTPKEKGKKAPRVWELGGCANKEVLDYSTPTTNGTPEAALSEDINLI
RGTGPGGQLQDLDCSSSDDEGATQNTKPSATKGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAK
NVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVT
FCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLTALHPPEKHGGRTMVQLFEK
GYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQ
LVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVV
AALMKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH