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Report for CCDS14471.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14471.1 Public Homo sapiens X SRPX2 24 110 108 CCDS HistoryNCBI Gene:27286Re-query CCDS DB by CCDS ID:14471.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14471.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373004.5 ENSP00000362095.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373004.5Link to Ensembl Protein Viewer:ENSP00000362095.3Re-query CCDS DB by Nucleotide ID:ENST00000373004Re-query CCDS DB by Protein ID:ENSP00000362095
Original member Current member NCBI NM_014467.3 NP_055282.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014467.3Link to Protein Sequence:NP_055282.1Re-query CCDS DB by Nucleotide ID:NM_014467Re-query CCDS DB by Protein ID:NP_055282Link to BLAST:NP_055282.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055282.1 465 O60687 465 100% 0 0

Chromosomal Locations for CCDS 14471.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 100646323 100646404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100650785 100650865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100662176 100662367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100664774 100664950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100665243 100665369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100665536 100665657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100666754 100666933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100667274 100667407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100669248 100669369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100670807 100670987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1398 nt):
ATGGCCAGTCAGCTAACTCAAAGAGGAGCTCTCTTTCTGCTGTTCTTCCTAACTCCGGCAGTGACACCAA
CATGGTATGCAGGTTCTGGCTACTATCCGGATGAAAGCTACAATGAAGTATATGCAGAGGAGGTCCCACA
GGCTCCTGCCCTGGACTACCGAGTCCCCCGATGGTGTTATACATTAAATATCCAGGATGGAGAAGCCACA
TGCTACTCACCGAAGGGAGGAAATTATCACAGCAGCCTGGGCACGCGTTGTGAGCTCTCCTGTGACCGGG
GCTTTCGATTGATTGGAAGGAGGTCGGTGCAATGCCTGCCAAGCCGTCGTTGGTCTGGAACTGCCTACTG
CAGGCAGATGAGATGCCACGCACTACCATTCATCACTAGTGGCACTTACACCTGCACAAATGGAGTGCTT
CTTGACTCTCGCTGTGACTACAGCTGTTCCAGTGGCTACCACCTGGAAGGTGATCGCAGCCGAATCTGCA
TGGAAGATGGGAGATGGAGTGGAGGCGAGCCTGTATGTGTAGACATAGATCCCCCCAAGATCCGCTGTCC
CCACTCACGTGAGAAGATGGCAGAGCCAGAGAAATTGACTGCTCGAGTATACTGGGACCCACCGTTGGTG
AAAGATTCTGCTGATGGTACCATCACCAGGGTGACACTTCGGGGCCCTGAGCCTGGCTCTCACTTTCCCG
AAGGAGAGCATGTGATTCGTTACACTGCCTATGACCGAGCCTACAACCGGGCCAGCTGCAAGTTCATTGT
GAAAGTACAAGTGAGACGCTGCCCAACTCTGAAACCTCCGCAGCACGGCTACCTCACCTGCACCTCAGCG
GGGGACAACTATGGTGCCACCTGTGAATACCACTGTGATGGCGGTTATGATCGCCAGGGGACACCCTCCC
GGGTCTGTCAGTCCAGCCGCCAGTGGTCAGGTTCACCACCAATCTGTGCTCCTATGAAGATTAACGTCAA
CGTCAACTCAGCTGCTGGTCTCTTGGATCAATTCTATGAGAAACAGCGACTCCTCATCATCTCAGCTCCT
GATCCTTCCAACCGATATTATAAAATGCAGATCTCTATGCTACAGCAATCCACCTGTGGACTGGATTTGC
GGCATGTGACCATCATTGAACTGGTGGGACAGCCACCTCAGGAGGTGGGGCGCATCCGGGAGCAACAGCT
GTCAGCCAACATCATCGAGGAGCTCAGGCAATTTCAGCGCCTCACTCGCTCCTACTTCAACATGGTGTTG
ATTGACAAGCAGGGTATTGACCGAGACCGCTACATGGAACCTGTCACCCCCGAGGAAATCTTCACATTCA
TTGATGACTACCTACTGAGCAATCAGGAGTTGACCCAGCGTCGGGAGCAAAGGGACATATGCGAGTGA

Translation (465 aa):
MASQLTQRGALFLLFFLTPAVTPTWYAGSGYYPDESYNEVYAEEVPQAPALDYRVPRWCYTLNIQDGEAT
CYSPKGGNYHSSLGTRCELSCDRGFRLIGRRSVQCLPSRRWSGTAYCRQMRCHALPFITSGTYTCTNGVL
LDSRCDYSCSSGYHLEGDRSRICMEDGRWSGGEPVCVDIDPPKIRCPHSREKMAEPEKLTARVYWDPPLV
KDSADGTITRVTLRGPEPGSHFPEGEHVIRYTAYDRAYNRASCKFIVKVQVRRCPTLKPPQHGYLTCTSA
GDNYGATCEYHCDGGYDRQGTPSRVCQSSRQWSGSPPICAPMKINVNVNSAAGLLDQFYEKQRLLIISAP
DPSNRYYKMQISMLQQSTCGLDLRHVTIIELVGQPPQEVGRIREQQLSANIIEELRQFQRLTRSYFNMVL
IDKQGIDRDRYMEPVTPEEIFTFIDDYLLSNQELTQRREQRDICE


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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