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Report for CCDS27933.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27933.1 Public Mus musculus 16 Nagpa 23 108 98 CCDS HistoryNCBI Gene:27426Re-query CCDS DB by CCDS ID:27933.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27933.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023911.10 ENSMUSP00000023911.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023911.10Link to Ensembl Protein Viewer:ENSMUSP00000023911.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000023911Re-query CCDS DB by Protein ID:ENSMUSP00000023911
Original member Current member NCBI NM_013796.3 NP_038824.2 Accepted alive Link to Nucleotide Sequence:NM_013796.3Link to Protein Sequence:NP_038824.2Re-query CCDS DB by Nucleotide ID:NM_013796Re-query CCDS DB by Protein ID:NP_038824Link to BLAST:NP_038824.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038824.2 517 Q8BJ48 517 100% 0 0

Chromosomal Locations for CCDS 27933.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 5195848 5196058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5197555 5197618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5197712 5197813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5198576 5198623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5198731 5198936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5199616 5199744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5199943 5200051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5201374 5201513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5203341 5203799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5203897 5203982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1554 nt):
ATGGCGGCGCCCAGGGGGCCCGGGCTGTTCCTCATACCCGCGCTGCTCGGCTTACTCGGGGTGGCGTGGT
GCAGCCTAAGCTTCGGGGTTTCCCGCGACGATGACCTGCTGCTGCCTTACCCACTAGCGCGCAGACGTCC
CTCGCGAGACTGCGCCCGGGTGCGCTCAGGTAGCCCAGAGCAGGAGAGCTGGCCTCCGCCACCCACGAAC
CCCGGCGCCAGCCACCACGCGGCCGTGCGCACCTTCGTGTCGCACTTCGAGGGGCGCGCGGTGGCCGGCC
ACCTGACGCGGGTCGCCGATCCCCTACGCACTTTCTCGGTGCTGGAGCCCGGAGGAGCCGGGGGCTGCGC
GCAGAAGCGCCGCGCTACTGTGGAGGACACAGCCGTCCCGGCCGGTTGCCGCATCGCTCAGAACGGTGGC
TTCTTCCGCATGAGCACTGGCGAGTGCTTGGGGAACGTGGTGAGCGACGGGCGGCTGGTGAGCAGCTCAG
GGGGACTGCAGAACGCGCAGTTCGGTATCCGACGCGATGGAACCATAGTCACCGGGTACCTGTCTGAGGA
GGAGGTTCTGGATCCCGTGAATCCGTTCGTGCAGCTGCTGAGCGGAGTCGTGTGGCTCATCCGCAATGGA
AACATCTACATCAACGAGAGCCAAGCCATCGAGTGTGACGAGACACAGGAGACAGGTTCTTTTAGCAAAT
TTGTGAATGTGATGTCAGCCAGGACAGCCGTGGGTCATGACCGTGAGGGGCAGCTTATCCTCTTCCATGC
TGATGGACAGACGGAACAGCGTGGCCTTAACCTATGGGAGATGGCAGAGTTCCTGCGTCAACAAGATGTC
GTCAATGCCATCAACCTGGATGGAGGCGGTTCTGCTACTTTTGTGCTCAATGGGACCCTGGCCAGTTACC
CTTCAGATCACTGCCAGGACAACATGTGGCGCTGTCCCCGCCAAGTGTCCACTGTGGTGTGTGTGCATGA
ACCGCGCTGCCAGCCACCCGACTGCAGTGGCCATGGGACCTGTGTGGATGGCCACTGTGAATGCACCAGC
CACTTCTGGCGGGGCGAGGCCTGCAGCGAGCTGGACTGTGGCCCCTCCAACTGCAGCCAGCATGGGCTGT
GCACAGAGACTGGCTGCCACTGTGATGCTGGGTGGACAGGATCCAACTGCAGTGAAGAGTGTCCTCTGGG
CTGGTATGGGCCAGGTTGCCAGAGGCCCTGCCAGTGTGAGCACCAGTGTTCCTGTGACCCGCAGACTGGC
AACTGCAGCATCTCCCAAGTGAGGCAGTGTCTCCAGCCAACTGAGGCTACGCCGAGGGCAGGAGAGCTGG
CCTCTTTCACCAGGACCACCTGGCTAGCCCTCACCCTGACACTAATTTTCCTGCTGCTGATCAGCACTGG
GGTCAACGTGTCCTTGTTCCTGGGCTCCAGGGCCGAGAGGAACCGGCACCTCGACGGGGACTATGTGTAT
CACCCACTGCAGGAGGTGAACGGGGAAGCGCTGACTGCAGAGAAGGAGCACATGGAGGAAACTAGCAACC
CCTTCAAGGACTGA

Translation (517 aa):
MAAPRGPGLFLIPALLGLLGVAWCSLSFGVSRDDDLLLPYPLARRRPSRDCARVRSGSPEQESWPPPPTN
PGASHHAAVRTFVSHFEGRAVAGHLTRVADPLRTFSVLEPGGAGGCAQKRRATVEDTAVPAGCRIAQNGG
FFRMSTGECLGNVVSDGRLVSSSGGLQNAQFGIRRDGTIVTGYLSEEEVLDPVNPFVQLLSGVVWLIRNG
NIYINESQAIECDETQETGSFSKFVNVMSARTAVGHDREGQLILFHADGQTEQRGLNLWEMAEFLRQQDV
VNAINLDGGGSATFVLNGTLASYPSDHCQDNMWRCPRQVSTVVCVHEPRCQPPDCSGHGTCVDGHCECTS
HFWRGEACSELDCGPSNCSQHGLCTETGCHCDAGWTGSNCSEECPLGWYGPGCQRPCQCEHQCSCDPQTG
NCSISQVRQCLQPTEATPRAGELASFTRTTWLALTLTLIFLLLISTGVNVSLFLGSRAERNRHLDGDYVY
HPLQEVNGEALTAEKEHMEETSNPFKD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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