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Report for CCDS4680.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4680.1 Public Homo sapiens 6 GNL1 24 110 108 CCDS HistoryNCBI Gene:2794Re-query CCDS DB by CCDS ID:4680.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4680.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376621.8 ENSP00000365806.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000376621.8Link to Ensembl Protein Viewer:ENSP00000365806.3Re-query CCDS DB by Nucleotide ID:ENST00000376621Re-query CCDS DB by Protein ID:ENSP00000365806
Original member Current member NCBI NM_005275.5 NP_005266.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005275.5Link to Protein Sequence:NP_005266.2Re-query CCDS DB by Nucleotide ID:NM_005275Re-query CCDS DB by Protein ID:NP_005266Link to BLAST:NP_005266.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005266.2 607 P36915-1 607 100% 0 0

Chromosomal Locations for CCDS 4680.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 30546072 30546313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30546696 30546836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30547112 30547274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30547352 30547530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30552467 30552661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30553084 30553179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30553350 30553557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30554575 30554646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30554764 30554915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30555055 30555191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30555555 30555720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30556131 30556203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1824 nt):
ATGCCGAGGAAGAAGCCATTCAGCGTGAAGCAGAAGAAGAAGCAGTTGCAGGACAAACGGGAGCGGAAGA
GAGGGCTTCAAGATGGGCTGCGCTCCAGTTCCAACAGCCGCAGCGGGAGCCGGGAGCGGCGAGAGGAACA
GACCGACACCTCGGACGGGGAGTCTGTGACCCATCATATCCGCAGGCTTAACCAGCAGCCTTCTCAGGGG
CTGGGTCCACGAGGCTACGACCCAAATCGATACCGACTGCATTTTGAGAGAGACAGCAGGGAGGAGGTAG
AGAGGAGAAAGAGAGCAGCCCGGGAGCAAGTTCTACAGCCGGTCAGTGCTGAGTTGTTGGAGCTGGACAT
CCGGGAGGTGTATCAGCCTGGCTCAGTTCTGGACTTTCCTCGACGTCCTCCTTGGAGCTATGAGATGTCC
AAGGAGCAACTAATGAGCCAAGAGGAACGGAGCTTCCAAGACTATCTTGGGAAGATTCATGGGGCTTACT
CCTCTGAGAAACTCAGCTACTTTGAGCACAATCTGGAGACATGGAGGCAGCTGTGGCGGGTGTTAGAGAT
GTCTGACATCGTCCTGCTTATCACTGATATCCGACATCCAGTTGTGAATTTCCCGCCAGCACTTTATGAG
TATGTGACTGGAGAACTTGGACTGGCCCTGGTGCTGGTTTTGAACAAGGTGGATCTGGCCCCGCCAGCTC
TTGTGGTTGCCTGGAAGCATTATTTCCATCAACACTATCCCCAGCTCCACGTCGTCCTTTTCACCTCTTT
TCCTCGGGACCCCCGCACCCCACAGGACCCTAGTAGTGTCTTGAAGAAGAGTCGGAGGCGGGGGAGAGGA
TGGACTCGGGCCCTGGGGCCAGAGCAGTTGCTGAGAGCCTGTGAAGCCATCACTGTGGGGAAAGTGGACT
TGAGCAGCTGGCGGGAGAAGATTGCTCGGGATGTGGCTGGGGCCACCTGGGGTAATGGCTCTGGGGAGGA
GGAGGAAGAGGAGGATGGCCCAGCAGTCCTGGTGGAGCAGCAGACTGATTCAGCAATGGAGCCAACTGGC
CCAACCCAAGAGCGCTACAAGGATGGGGTGGTGACCATCGGCTGTGTGGGTTTCCCTAATGTGGGAAAGT
CCTCGCTGATCAATGGGCTGGTGGGGCGGAAAGTCGTGAGTGTCTCCAGAACCCCGGGCCATACCCGATA
CTTTCAGACCTACTTTCTTACCCCCTCTGTGAAGCTCTGTGACTGCCCAGGCCTCATCTTCCCATCTCTT
CTGCCTAGGCAGTTGCAGGTTCTGGCAGGGATCTACCCTATCGCCCAGATCCAGGAGCCCTACACTGCTG
TGGGCTACCTGGCCTCCCGAATTCCCGTGCAGGCCCTGCTCCACCTGCGCCACCCAGAGGCTGAGGACCC
CTCAGCGGAACACCCCTGGTGTGCCTGGGACATCTGTGAAGCCTGGGCAGAGAAACGTGGTTACAAGACA
GCCAAGGCGGCTCGGAATGATGTGTACAGAGCAGCCAACAGTCTCTTGCGGCTGGCAGTGGACGGCCGCC
TCAGCCTGTGTTTTCATCCCCCAGGCTACAGTGAACAGAAAGGCACCTGGGAGTCCCATCCAGAGACCAC
GGAGCTGGTGGTTTTGCAGGGCAGGGTGGGGCCAGCAGGTGACGAGGAGGAGGAGGAAGAGGAAGAGCTG
AGCAGCTCCTGTGAGGAGGAGGGAGAGGAGGACCGGGATGCGGATGAGGAGGGAGAAGGGGATGAGGAGA
CCCCAACCTCGGCTCCAGGGTCCAGCCTGGCTGGCCGAAACCCTTATGCCCTGCTGGGTGAGGATGAGTG
CTGA

Translation (607 aa):
MPRKKPFSVKQKKKQLQDKRERKRGLQDGLRSSSNSRSGSRERREEQTDTSDGESVTHHIRRLNQQPSQG
LGPRGYDPNRYRLHFERDSREEVERRKRAAREQVLQPVSAELLELDIREVYQPGSVLDFPRRPPWSYEMS
KEQLMSQEERSFQDYLGKIHGAYSSEKLSYFEHNLETWRQLWRVLEMSDIVLLITDIRHPVVNFPPALYE
YVTGELGLALVLVLNKVDLAPPALVVAWKHYFHQHYPQLHVVLFTSFPRDPRTPQDPSSVLKKSRRRGRG
WTRALGPEQLLRACEAITVGKVDLSSWREKIARDVAGATWGNGSGEEEEEEDGPAVLVEQQTDSAMEPTG
PTQERYKDGVVTIGCVGFPNVGKSSLINGLVGRKVVSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPSL
LPRQLQVLAGIYPIAQIQEPYTAVGYLASRIPVQALLHLRHPEAEDPSAEHPWCAWDICEAWAEKRGYKT
AKAARNDVYRAANSLLRLAVDGRLSLCFHPPGYSEQKGTWESHPETTELVVLQGRVGPAGDEEEEEEEEL
SSSCEEEGEEDRDADEEGEGDEETPTSAPGSSLAGRNPYALLGEDEC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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