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Report for CCDS48980.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48980.1 Public Mus musculus 11 Cd300lf 23 108 98 CCDS HistoryNCBI Gene:246746Re-query CCDS DB by CCDS ID:48980.1Re-query CCDS DB by GeneID:246746See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48980.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106561.7 ENSMUSP00000102171.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106561.7Link to Ensembl Protein Viewer:ENSMUSP00000102171.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106561Re-query CCDS DB by Protein ID:ENSMUSP00000102171
Original member Current member NCBI NM_001169153.1 NP_001162624.1 Accepted alive Link to Nucleotide Sequence:NM_001169153.1Link to Protein Sequence:NP_001162624.1Re-query CCDS DB by Nucleotide ID:NM_001169153Re-query CCDS DB by Protein ID:NP_001162624Link to BLAST:NP_001162624.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001162624.1 337 Q6SJQ7-1 337 100% 0 0

Chromosomal Locations for CCDS 48980.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 115116974 115117150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115117543 115117686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115118070 115118092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115120264 115120418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115124248 115124377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115126111 115126452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115133839 115133881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1014 nt):
ATGCATTTGTCATTGCTGGTCCCCTTTCTCTTCTGGATCACAGGCTGCTGCACGGCTGAGGATCCAGTCA
CAGGTCCAGAGGAGGTGAGCGGTCAGGAGCAGGGCTCCTTGACAGTGCAGTGCCGATATACCTCAGGCTG
GAAGGATTACAAGAAGTACTGGTGCCAAGGAGTTCCTCAGAGATCATGTAAGACTCTTGTTGAAACCGAT
GCATCAGAGCAGCTGGTGAAGAAGAACCGTGTGTCCATCAGGGACAACCAGAGAGACTTCATCTTCACAG
TGACCATGGAGGATCTGAGGATGAGCGATGCTGGCATTTACTGGTGTGGAATTACGAAAGGTGGACTTGA
TCCCATGTTTAAAGTTACTGTGAACATTGGCCCAGCAATCCAAGTACCCATTACAGTGCCAACCATGCCC
CCCATCACCTCCACCACCACCATCTTCACAGTGACAACCACAGTAAAAGAGACCAGCATGTTTCCAACGC
TGACTAGCTACTACTCTGATAACGGGCATGGCGGTGGTGACAGTGGCGGTGGTGAAGATGGCGTCGGTGA
TGGGTTTCTGGATCTCAGTGTGCTCCTCCCAGTCATCTCTGCAGTCCTGTTGCTTCTCCTGTTGGTGGCC
TCGCTCTTTGCTTGGAGGATGGTGAGGAGACAGAAGAAAGCTGCTGGGCCACCATCAGAGCAGGCACAGT
CTCTGGAGGGTGATCTCTGTTATGCAGACCTGTCCCTGAAGCAGCCCAGAACCTCCCCTGGCTCCTCTTG
GAAAAAGGGCTCCTCCATGTCCTCCTCTGGCAAGGACCACCAAGAGGAAGTGGAATATGTCACCATGGCT
CCCTTTCCCAGGGAGGAGGTTTCATATGCCGCTCTGACTTTGGCCGGCTTGGGTCAGGAGCCTACTTATG
GCAATACTGGCTGCCCCATCACCCACGTTCCCAGGACAGGCCTTGAAGAGGAGACCACAGAGTACAGCAG
CATCAGGAGGCCCTTGCCTGCAGCCATGCCTTAA

Translation (337 aa):
MHLSLLVPFLFWITGCCTAEDPVTGPEEVSGQEQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETD
ASEQLVKKNRVSIRDNQRDFIFTVTMEDLRMSDAGIYWCGITKGGLDPMFKVTVNIGPAIQVPITVPTMP
PITSTTTIFTVTTTVKETSMFPTLTSYYSDNGHGGGDSGGGEDGVGDGFLDLSVLLPVISAVLLLLLLVA
SLFAWRMVRRQKKAAGPPSEQAQSLEGDLCYADLSLKQPRTSPGSSWKKGSSMSSSGKDHQEEVEYVTMA
PFPREEVSYAALTLAGLGQEPTYGNTGCPITHVPRTGLEEETTEYSSIRRPLPAAMP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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