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Report for CCDS11724.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11724.1 Public Homo sapiens 17 TSEN54 24 110 108 CCDS HistoryNCBI Gene:283989Re-query CCDS DB by CCDS ID:11724.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11724.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000333213.11 ENSP00000327487.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000333213.11Link to Ensembl Protein Viewer:ENSP00000327487.6Re-query CCDS DB by Nucleotide ID:ENST00000333213Re-query CCDS DB by Protein ID:ENSP00000327487
Original member Current member NCBI NM_207346.3 NP_997229.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_207346.3Link to Protein Sequence:NP_997229.2Re-query CCDS DB by Nucleotide ID:NM_207346Re-query CCDS DB by Protein ID:NP_997229Link to BLAST:NP_997229.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997229.2 526 Q7Z6J9-1 526 100% 0 0

Chromosomal Locations for CCDS 11724.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 75516561 75516616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75516746 75516910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75517009 75517072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75517161 75517244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75517557 75517655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75518995 75519047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75521409 75521510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75521705 75522333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75523275 75523335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75523663 75523779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75524262 75524412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1581 nt):
ATGGAGCCCGAGCCCGAGCCCGCGGCCGTGGAGGTTCCCGCGGGGCGCGTGCTCAGCGCCCGGGAGCTCT
TCGCCGCCCGCTCGCGGTCGCAGAAGCTGCCCCAGCGCTCGCATGGCCCCAAGGACTTTCTGCCCGACGG
CTCGGCAGCTCAGGCCGAGCGGCTGCGCCGGTGCCGGGAAGAGCTCTGGCAGCTGCTGGCAGAGCAGCGC
GTGGAGCGCCTGGGCAGCTTGGTGGCTGCCGAGTGGAGGCCAGAAGAGGGCTTCGTGGAGTTGAAGTCTC
CCGCGGGCAAATTCTGGCAGACCATGGGCTTCTCAGAGCAGGGCCGGCAGCGCCTTCACCCGGAAGAGGC
CTTGTATCTTCTGGAGTGTGGCTCCATCCACCTCTTCCACCAAGACCTGCCACTGTCTATCCAGGAAGCT
TACCAGCTGCTGCTGACCGACCACACTGTGACCTTCCTGCAGTACCAGGTCTTCAGCCACCTGAAGAGGT
TGGGTTATGTGGTTCGACGATTCCAACCAAGCTCTGTCCTGTCCCCGTATGAGAGGCAGCTTAACCTGGA
TGCCAGCGTGCAGCACTTGGAGGATGGAGATGGCAAGAGAAAGAGGAGCAGCTCCAGCCCTCGGTCCATT
AATAAGAAGGCCAAGGCCCTGGACAACTCCCTGCAACCCAAGAGTCTGGCAGCCTCCAGCCCACCTCCCT
GCAGCCAGCCCAGCCAATGCCCAGAGGAGAAACCCCAGGAGTCAAGCCCCATGAAGGGCCCAGGGGGCCC
CTTTCAGCTTCTGGGGTCCCTGGGCCCCAGCCCTGGCCCGGCCAGGGAGGGGGTGGGGTGCAGCTGGGAG
AGTGGCAGAGCCGAGAACGGAGTCACGGGAGCCGGTAAGCGGCGCTGGAACTTCGAGCAGATCTCCTTCC
CCAACATGGCTTCAGACAGCCGCCACACCCTTCTGCGCGCCCCAGCCCCAGAGCTGCTCCCGGCCAACGT
GGCTGGGCGGGAGACAGACGCTGAGTCCTGGTGCCAGAAGCTGAACCAGCGCAAGGAGAAGCTCTCCAGG
CGGGAACGGGAGCACCACGCGGAGGCCGCGCAGTTCCAGGAAGATGTCAACGCCGATCCCGAGGTGCAGC
GGTGCTCCAGCTGGCGGGAGTACAAGGAGCTGCTGCAGCGGCGGCAGGTGCAGAGGAGCCAGCGCCGGGC
CCCTCACCTGTGGGGCCAGCCCGTCACCCCGCTGCTGAGTCCTGGCCAGGCCAGCTCCCCAGCCGTGGTC
CTTCAGCATATCTCTGTGCTGCAGACAACACACCTTCCTGATGGAGGTGCCCGGCTGTTGGAGAAGTCTG
GGGGCTTGGAAATCATCTTTGATGTTTACCAGGCCGACGCTGTGGCCACATTCCGAAAGAATAACCCTGG
CAAACCCTATGCCCGGATGTGCATTAGTGGATTTGATGAGCCTGTCCCAGACCTCTGCAGCCTCAAGCGG
TTGTCTTACCAGAGTGGGGATGTCCCTCTGATCTTTGCCCTGGTGGATCATGGTGACATCTCCTTCTACA
GCTTCAGGGACTTCACGTTGCCCCAGGATGTGGGGCACTGA

Translation (526 aa):
MEPEPEPAAVEVPAGRVLSARELFAARSRSQKLPQRSHGPKDFLPDGSAAQAERLRRCREELWQLLAEQR
VERLGSLVAAEWRPEEGFVELKSPAGKFWQTMGFSEQGRQRLHPEEALYLLECGSIHLFHQDLPLSIQEA
YQLLLTDHTVTFLQYQVFSHLKRLGYVVRRFQPSSVLSPYERQLNLDASVQHLEDGDGKRKRSSSSPRSI
NKKAKALDNSLQPKSLAASSPPPCSQPSQCPEEKPQESSPMKGPGGPFQLLGSLGPSPGPAREGVGCSWE
SGRAENGVTGAGKRRWNFEQISFPNMASDSRHTLLRAPAPELLPANVAGRETDAESWCQKLNQRKEKLSR
REREHHAEAAQFQEDVNADPEVQRCSSWREYKELLQRRQVQRSQRRAPHLWGQPVTPLLSPGQASSPAVV
LQHISVLQTTHLPDGGARLLEKSGGLEIIFDVYQADAVATFRKNNPGKPYARMCISGFDEPVPDLCSLKR
LSYQSGDVPLIFALVDHGDISFYSFRDFTLPQDVGH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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