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Report for CCDS33872.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33872.1 Public Homo sapiens 3 SLC9A9 24 110 108 CCDS HistoryNCBI Gene:285195Re-query CCDS DB by CCDS ID:33872.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33872.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000316549.11 ENSP00000320246.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000316549.11Link to Ensembl Protein Viewer:ENSP00000320246.6Re-query CCDS DB by Nucleotide ID:ENST00000316549Re-query CCDS DB by Protein ID:ENSP00000320246
Original member Current member NCBI NM_173653.4 NP_775924.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173653.4Link to Protein Sequence:NP_775924.1Re-query CCDS DB by Nucleotide ID:NM_173653Re-query CCDS DB by Protein ID:NP_775924Link to BLAST:NP_775924.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775924.1 645 Q8IVB4 645 100% 0 0

Chromosomal Locations for CCDS 33872.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 143266702 143266929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 143268875 143268980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 143363484 143363563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 143382060 143382114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 143467037 143467190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 143493653 143493764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 143495335 143495448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 143552362 143552450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 143574088 143574193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 143578585 143578723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 143652255 143652360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 143693192 143693307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 143795001 143795077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 143796826 143796903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 143832019 143832221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 143848148 143848322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1938 nt):
ATGGAGAGACAGTCAAGGGTTATGTCAGAAAAGGATGAGTATCAGTTTCAACATCAGGGAGCGGTGGAGC
TGCTTGTCTTCAATTTTTTGCTCATCCTTACCATTTTGACAATCTGGTTATTTAAAAATCATCGATTCCG
CTTCTTGCATGAAACTGGAGGAGCAATGGTGTATGGCCTTATAATGGGACTAATTTTACGATATGCTACA
GCACCAACTGATATTGAAAGTGGAACTGTCTATGACTGTGTAAAACTAACTTTCAGTCCATCAACTCTGC
TGGTTAATATCACTGACCAAGTTTATGAATATAAATACAAAAGAGAAATAAGTCAGCACAACATCAATCC
TCATCAAGGAAATGCTATACTTGAAAAGATGACATTTGATCCAGAAATCTTCTTCAATGTTTTACTGCCA
CCAATTATATTTCATGCAGGATATAGTCTAAAGAAGAGACACTTTTTTCAAAACTTAGGATCTATTTTAA
CGTATGCCTTCTTGGGAACTGCCATCTCCTGCATCGTCATAGGGTTAATTATGTATGGTTTTGTGAAGGC
TATGATACATGCTGGCCAGCTGAAAAATGGAGACTTTCATTTCACTGACTGTTTATTTTTTGGTTCACTG
ATGTCTGCTACAGATCCAGTGACAGTGCTGGCCATTTTCCATGAACTGCACGTCGACCCTGACCTGTACA
CACTCTTGTTTGGAGAGAGTGTGTTGAATGATGCAGTGGCCATAGTCCTTACATATTCTATATCCATTTA
CAGTCCCAAGGAGAATCCAAATGCATTTGATGCCGCAGCATTCTTCCAGTCTGTGGGGAATTTCCTGGGA
ATCTTCGCTGGCTCATTTGCAATGGGGTCTGCGTATGCCATCATCACAGCACTGTTGACCAAATTTACCA
AGCTGTGTGAGTTCCCGATGCTGGAAACCGGCCTGTTTTTCCTGCTTTCTTGGAGTGCCTTCCTGTCTGC
CGAGGCTGCCGGCCTAACAGGGATAGTTGCTGTTCTCTTCTGTGGAGTCACACAAGCACATTATACCTAC
AACAATCTGTCTTCGGATTCCAAAATAAGAACTAAACAGTTGTTTGAATTTATGAACTTTTTGGCGGAGA
ACGTCATCTTCTGTTACATGGGCCTGGCACTGTTCACGTTCCAGAATCATATCTTTAATGCTCTTTTTAT
ACTTGGAGCCTTTCTAGCAATTTTTGTTGCCAGAGCCTGCAACATATATCCCCTCTCCTTCCTCCTGAAT
CTAGGCCGAAAACAGAAGATCCCCTGGAACTTTCAGCACATGATGATGTTTTCAGGTTTGCGAGGAGCGA
TCGCATTTGCCTTAGCTATTCGGAACACAGAATCTCAGCCCAAACAAATGATGTTTACCACTACGCTGCT
CCTCGTGTTCTTCACTGTCTGGGTATTTGGAGGAGGAACAACCCCCATGTTGACTTGGCTTCAGATCAGA
GTTGGCGTGGACCTGGATGAAAATCTGAAGGAGGACCCCTCCTCACAACACCAGGAAGCAAATAACTTGG
ATAAAAACATGACGAAAGCAGAGAGTGCTCGGCTCTTCAGAATGTGGTATAGCTTTGACCACAAGTATCT
GAAACCAATTTTAACCCACTCTGGTCCTCCGCTGACTACAACATTACCTGAATGGTGTGGTCCGATTTCC
AGGCTGCTTACCAGTCCTCAAGCCTATGGGGAACAGCTAAAAGAGGATGATGTGGAATGCATTGTAAACC
AGGATGAACTAGCCATAAATTACCAGGAGCAAGCCTCCTCACCCTGCAGTCCTCCTGCAAGGCTAGGTCT
GGACCAGAAAGCTTCACCCCAGACGCCAGGCAAGGAAAACATTTATGAGGGAGACCTCGGCCTGGGAGGC
TATGAACTCAAGCTTGAGCAAACTTTGGGTCAATCCCAGTTGAATTAA

Translation (645 aa):
MERQSRVMSEKDEYQFQHQGAVELLVFNFLLILTILTIWLFKNHRFRFLHETGGAMVYGLIMGLILRYAT
APTDIESGTVYDCVKLTFSPSTLLVNITDQVYEYKYKREISQHNINPHQGNAILEKMTFDPEIFFNVLLP
PIIFHAGYSLKKRHFFQNLGSILTYAFLGTAISCIVIGLIMYGFVKAMIHAGQLKNGDFHFTDCLFFGSL
MSATDPVTVLAIFHELHVDPDLYTLLFGESVLNDAVAIVLTYSISIYSPKENPNAFDAAAFFQSVGNFLG
IFAGSFAMGSAYAIITALLTKFTKLCEFPMLETGLFFLLSWSAFLSAEAAGLTGIVAVLFCGVTQAHYTY
NNLSSDSKIRTKQLFEFMNFLAENVIFCYMGLALFTFQNHIFNALFILGAFLAIFVARACNIYPLSFLLN
LGRKQKIPWNFQHMMMFSGLRGAIAFALAIRNTESQPKQMMFTTTLLLVFFTVWVFGGGTTPMLTWLQIR
VGVDLDENLKEDPSSQHQEANNLDKNMTKAESARLFRMWYSFDHKYLKPILTHSGPPLTTTLPEWCGPIS
RLLTSPQAYGEQLKEDDVECIVNQDELAINYQEQASSPCSPPARLGLDQKASPQTPGKENIYEGDLGLGG
YELKLEQTLGQSQLN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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