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Report for CCDS14258.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14258.1 Public Homo sapiens X GPR34 24 110 108 CCDS HistoryNCBI Gene:2857Re-query CCDS DB by CCDS ID:14258.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14258.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378138.5 ENSP00000367378.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000378138.5Link to Ensembl Protein Viewer:ENSP00000367378.5Re-query CCDS DB by Nucleotide ID:ENST00000378138Re-query CCDS DB by Protein ID:ENSP00000367378
Original member Current member EBI ENST00000378142.9 ENSP00000367384.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378142.9Link to Ensembl Protein Viewer:ENSP00000367384.4Re-query CCDS DB by Nucleotide ID:ENST00000378142Re-query CCDS DB by Protein ID:ENSP00000367384
Original member Current member EBI ENST00000649219.1 ENSP00000498130.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000649219.1Link to Ensembl Protein Viewer:ENSP00000498130.1Re-query CCDS DB by Nucleotide ID:ENST00000649219Re-query CCDS DB by Protein ID:ENSP00000498130
Original member Current member NCBI NM_001097579.2 NP_001091048.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001097579.2Link to Protein Sequence:NP_001091048.1Re-query CCDS DB by Nucleotide ID:NM_001097579Re-query CCDS DB by Protein ID:NP_001091048Link to BLAST:NP_001091048.1
Original member Current member NCBI NM_005300.4 NP_005291.1 Accepted alive Link to Nucleotide Sequence:NM_005300.4Link to Protein Sequence:NP_005291.1Re-query CCDS DB by Nucleotide ID:NM_005300Re-query CCDS DB by Protein ID:NP_005291Link to BLAST:NP_005291.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001091048.1 381 Q9UPC5 381 100% 0 0
NP_005291.1 381 Q9UPC5 381 100% 0 0

Chromosomal Locations for CCDS 14258.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 41695634 41696779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1146 nt):
ATGAGAAGTCATACCATAACAATGACGACAACTTCAGTCAGCAGCTGGCCTTACTCCTCCCACAGAATGC
GCTTTATAACCAATCATAGCGACCAACCGCCACAAAACTTCTCAGCAACACCAAATGTTACTACCTGTCC
CATGGATGAAAAATTGCTATCTACTGTGTTAACCACATCCTACTCTGTTATTTTCATCGTGGGACTGGTT
GGGAACATAATCGCCCTCTATGTATTTCTGGGTATTCACCGTAAAAGAAATTCCATTCAAATTTATCTAC
TTAACGTAGCCATTGCAGACCTCCTACTCATCTTCTGCCTCCCTTTCCGAATAATGTATCATATTAACCA
AAACAAGTGGACACTAGGTGTGATTCTGTGCAAGGTTGTGGGAACACTGTTTTATATGAACATGTACATT
AGCATTATTTTGCTTGGATTCATCAGTTTGGATCGCTATATAAAAATTAATCGGTCTATACAGCAACGGA
AGGCAATAACAACCAAACAAAGTATTTATGTCTGTTGTATAGTATGGATGCTTGCTCTTGGTGGATTCCT
AACTATGATTATTTTAACACTTAAGAAAGGAGGGCATAATTCCACAATGTGTTTCCATTACAGAGATAAG
CATAACGCAAAAGGAGAAGCCATTTTTAACTTCATTCTTGTGGTAATGTTCTGGCTAATTTTCTTACTAA
TAATCCTTTCATATATTAAGATTGGGAAGAATCTATTGAGGATTTCTAAAAGGAGGTCAAAATTTCCTAA
TTCTGGTAAATATGCCACTACAGCTCGTAACTCCTTTATTGTACTTATCATTTTTACTATATGTTTTGTT
CCCTATCATGCCTTTCGATTCATCTACATTTCTTCACAGCTAAATGTATCATCTTGCTACTGGAAAGAAA
TTGTTCACAAAACCAATGAGATCATGCTGGTTCTCTCATCTTTCAATAGTTGCTTAGATCCAGTCATGTA
TTTCCTGATGTCCAGTAACATTCGCAAAATAATGTGCCAACTTCTTTTTAGACGATTTCAAGGTGAACCA
AGTAGGAGTGAAAGCACTTCAGAATTTAAACCAGGATACTCCCTGCATGATACATCTGTGGCAGTGAAAA
TACAGTCTAGTTCTAAAAGTACTTGA

Translation (381 aa):
MRSHTITMTTTSVSSWPYSSHRMRFITNHSDQPPQNFSATPNVTTCPMDEKLLSTVLTTSYSVIFIVGLV
GNIIALYVFLGIHRKRNSIQIYLLNVAIADLLLIFCLPFRIMYHINQNKWTLGVILCKVVGTLFYMNMYI
SIILLGFISLDRYIKINRSIQQRKAITTKQSIYVCCIVWMLALGGFLTMIILTLKKGGHNSTMCFHYRDK
HNAKGEAIFNFILVVMFWLIFLLIILSYIKIGKNLLRISKRRSKFPNSGKYATTARNSFIVLIIFTICFV
PYHAFRFIYISSQLNVSSCYWKEIVHKTNEIMLVLSSFNSCLDPVMYFLMSSNIRKIMCQLLFRRFQGEP
SRSESTSEFKPGYSLHDTSVAVKIQSSSKST


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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