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Report for CCDS4873.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4873.2 Public Homo sapiens 6 RPL7L1 24 110 108 CCDS HistoryNCBI Gene:285855Re-query CCDS DB by CCDS ID:4873.2See the combined annotation on chromosome 6 in Sequence Viewer

Public Note for CCDS 4873.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 4873.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000304734.9 ENSP00000346063.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000304734.9Link to Ensembl Protein Viewer:ENSP00000346063.4Re-query CCDS DB by Nucleotide ID:ENST00000304734Re-query CCDS DB by Protein ID:ENSP00000346063
Original member Current member EBI ENST00000493763.7 ENSP00000418221.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000493763.7Link to Ensembl Protein Viewer:ENSP00000418221.3Re-query CCDS DB by Nucleotide ID:ENST00000493763Re-query CCDS DB by Protein ID:ENSP00000418221
Original member Current member NCBI NM_001366481.3 NP_001353410.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001366481.3Link to Protein Sequence:NP_001353410.1Re-query CCDS DB by Nucleotide ID:NM_001366481Re-query CCDS DB by Protein ID:NP_001353410Link to BLAST:NP_001353410.1
Original member Current member NCBI NM_198486.5 NP_940888.3 Accepted alive Link to Nucleotide Sequence:NM_198486.5Link to Protein Sequence:NP_940888.3Re-query CCDS DB by Nucleotide ID:NM_198486Re-query CCDS DB by Protein ID:NP_940888Link to BLAST:NP_940888.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001353410.1 255 Q6DKI1-1 255 100% 0 0
NP_940888.3 255 Q6DKI1-1 255 100% 0 0

Chromosomal Locations for CCDS 4873.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 42879911 42879951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42880861 42880966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42883451 42883614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42884613 42884750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42885974 42886083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42886256 42886464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (768 nt):
ATGATCAGTAGCTGCACCACTAGAAAGATGGCGGAGCAAGAGCAAAGAAAAATCCCTTTGGTTCCAGAAA
ATCTCCTGAAAAAGAGGAAGGCTTATCAAGCCCTCAAAGCCACCCAGGCAAAGCAGGCACTTTTGGCAAA
GAAGGAGCAGAAGAAAGGAAAAGGGCTCAGGTTTAAGCGACTGGAATCATTCCTACATGATTCCTGGCGG
CAGAAACGTGACAAGGTGCGTCTCAGACGACTAGAAGTGAAACCTCATGCCTTGGAATTGCCAGATAAAC
ATTCCTTGGCCTTTGTTGTACGCATCGAAAGGATTGACGGCGTGAGTTTACTGGTGCAGAGAACCATTGC
AAGACTTCGCCTAAAGAAAATTTTTAGTGGTGTCTTTGTAAAAGTCACCCCCCAGAATCTAAAAATGCTG
CGTATAGTGGAACCTTATGTGACCTGGGGATTTCCAAATCTGAAGTCTGTCCGAGAACTCATTTTGAAAC
GTGGACAAGCCAAGGTCAAGAATAAGACCATCCCTCTGACAGACAATACAGTGATTGAGGAGCACCTGGG
GAAGTTTGGCGTCATTTGCTTGGAAGACCTCATTCATGAAATTGCCTTCCCAGGGAAGCATTTCCAGGAG
ATCTCATGGTTCTTGTGCCCTTTCCACCTCTCAGTGGCCCGTCATGCTACCAAAAATAGAGTGGGCTTCC
TCAAGGAGATGGGCACACCTGGCTATCGGGGTGAACGCATCAATCAGCTCATCCGTCAGCTGAACTAG

Translation (255 aa):
MISSCTTRKMAEQEQRKIPLVPENLLKKRKAYQALKATQAKQALLAKKEQKKGKGLRFKRLESFLHDSWR
QKRDKVRLRRLEVKPHALELPDKHSLAFVVRIERIDGVSLLVQRTIARLRLKKIFSGVFVKVTPQNLKML
RIVEPYVTWGFPNLKSVRELILKRGQAKVKNKTIPLTDNTVIEEHLGKFGVICLEDLIHEIAFPGKHFQE
ISWFLCPFHLSVARHATKNRVGFLKEMGTPGYRGERINQLIRQLN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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