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Report for CCDS26503.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26503.1 Public Mus musculus 13 Aspn 23 108 98 CCDS HistoryNCBI Gene:66695Re-query CCDS DB by CCDS ID:26503.1Re-query CCDS DB by GeneID:66695See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26503.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021820.13 ENSMUSP00000021820.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021820.13Link to Ensembl Protein Viewer:ENSMUSP00000021820.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000021820Re-query CCDS DB by Protein ID:ENSMUSP00000021820
Original member Current member EBI ENSMUST00000177948.1 ENSMUSP00000136728.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177948.1Link to Ensembl Protein Viewer:ENSMUSP00000136728.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177948Re-query CCDS DB by Protein ID:ENSMUSP00000136728
Original member Current member NCBI NM_001172481.1 NP_001165952.1 Accepted alive Link to Nucleotide Sequence:NM_001172481.1Link to Protein Sequence:NP_001165952.1Re-query CCDS DB by Nucleotide ID:NM_001172481Re-query CCDS DB by Protein ID:NP_001165952Link to BLAST:NP_001165952.1
Original member Current member NCBI NM_025711.3 NP_079987.2 Accepted alive Link to Nucleotide Sequence:NM_025711.3Link to Protein Sequence:NP_079987.2Re-query CCDS DB by Nucleotide ID:NM_025711Re-query CCDS DB by Protein ID:NP_079987Link to BLAST:NP_079987.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001165952.1 373 Q99MQ4 373 100% 0 0
NP_079987.2 373 Q99MQ4 373 100% 0 0

Chromosomal Locations for CCDS 26503.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 49551664 49551916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49553920 49554032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49557247 49557460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49558791 49558901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49563441 49563534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49563756 49563894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49566434 49566631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1122 nt):
ATGAAGGAGTATGTGATGCTACTGCTTTTGGCTGTGTGCTCTGCCAAACCCTTCTTTAGCCCTTCCCACA
CAGCACTGAAGAATATGATGTTGAAGGATATGGAAGACACAGATGATGACGATAACGATGATGACGACAA
CTCTCTTTTTCCAACGAAAGAGCCAGTGAACCCTTTTTTCCCTTTCGATTTGTTTCCAACATGTCCATTT
GGGTGCCAATGTTACTCTCGAGTTGTTCACTGCTCTGATCTAGGTCTGACATCGGTTCCAAACAACATTC
CATTTGATACTCGAATGGTTGACCTTCAAAATAATAAAATCAAGGAAATTAAAGAAAATGACTTTAAAGG
ACTCACTTCACTTTATGCTCTGATTCTGAACAACAACAAGCTAACAAAGATTCACCCAAAAACCTTTCTA
ACCACAAAGAAATTGAGAAGGCTATATTTATCCCACAACCAACTAAGTGAAATTCCACTTAATCTTCCCA
AATCATTAGCAGAACTCAGAATTCATGATAATAAAGTTAAGAAGATACAAAAGGACACGTTCAAGGGAAT
GAATGCTTTACATGTTTTGGAAATGAGTGCAAACCCTCTTGAGAACAACGGGATAGAACCAGGGGCATTT
GAAGGGGTGACAGTATTCCATATCAGGATCGCTGAAGCAAAACTAACCTCAATTCCAAAAGGCCTACCAC
CAACTTTGCTGGAGCTTCATTTAGATTTTAATAAAATTTCAACGGTGGAACTTGAAGATCTTAAACGGTA
CAGGGAACTGCAAAGGCTGGGTCTTGGAAACAACAGAATCACAGATATTGAAAATGGAACTTTTGCTAAT
ATACCACGTGTGAGAGAGATACACTTGGAACACAATAAACTAAAAAAAATCCCTTCAGGATTACAGGAGT
TGAAATACCTCCAGATAATCTTCCTTCATTATAATTCAATTGCAAAAGTGGGAGTGAATGACTTCTGTCC
AACAGTGCCAAAGATGAAGAAATCTTTATACAGTGCAATAAGTTTATTCAACAACCCAATGAAGTACTGG
GAAATACAACCTGCAACATTTCGTTGTGTTCTTGGCAGAATGAGTGTTCAGCTTGGGAATGTTGGAAAAT
AA

Translation (373 aa):
MKEYVMLLLLAVCSAKPFFSPSHTALKNMMLKDMEDTDDDDNDDDDNSLFPTKEPVNPFFPFDLFPTCPF
GCQCYSRVVHCSDLGLTSVPNNIPFDTRMVDLQNNKIKEIKENDFKGLTSLYALILNNNKLTKIHPKTFL
TTKKLRRLYLSHNQLSEIPLNLPKSLAELRIHDNKVKKIQKDTFKGMNALHVLEMSANPLENNGIEPGAF
EGVTVFHIRIAEAKLTSIPKGLPPTLLELHLDFNKISTVELEDLKRYRELQRLGLGNNRITDIENGTFAN
IPRVREIHLEHNKLKKIPSGLQELKYLQIIFLHYNSIAKVGVNDFCPTVPKMKKSLYSAISLFNNPMKYW
EIQPATFRCVLGRMSVQLGNVGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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