NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS14369.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14369.1 Public Homo sapiens X MAGEH1 24 110 108 CCDS HistoryNCBI Gene:28986Re-query CCDS DB by CCDS ID:14369.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14369.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000342972.3 ENSP00000343706.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000342972.3Link to Ensembl Protein Viewer:ENSP00000343706.1Re-query CCDS DB by Nucleotide ID:ENST00000342972Re-query CCDS DB by Protein ID:ENSP00000343706
Original member Current member NCBI NM_014061.5 NP_054780.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014061.5Link to Protein Sequence:NP_054780.2Re-query CCDS DB by Nucleotide ID:NM_014061Re-query CCDS DB by Protein ID:NP_054780Link to BLAST:NP_054780.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_054780.2 219 Q9H213 219 100% 0 0

Chromosomal Locations for CCDS 14369.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 55452375 55453034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (660 nt):
ATGCCTCGGGGACGAAAGAGTCGGCGCCGCCGTAATGCGAGAGCCGCAGAAGAGAACCGCAACAATCGCA
AAATCCAGGCCTCAGAGGCCTCCGAGACCCCTATGGCCGCCTCTGTGGTAGCGAGCACCCCCGAAGACGA
CCTGAGCGGCCCCGAGGAAGACCCGAGCACTCCAGAGGAGGCCTCTACCACCCCTGAAGAAGCCTCGAGC
ACTGCCCAAGCACAAAAGCCTTCAGTGCCCCGGAGCAATTTTCAGGGCACCAAGAAAAGTCTCCTGATGT
CTATATTAGCGCTCATCTTCATCATGGGCAACAGCGCCAAGGAAGCTCTGGTCTGGAAAGTGCTGGGGAA
GTTAGGAATGCAGCCTGGACGTCAGCACAGCATCTTTGGAGATCCGAAGAAGATCGTCACAGAAGAGTTT
GTGCGCAGAGGGTACCTGATTTATAAACCGGTGCCCCGTAGCAGTCCGGTGGAGTATGAGTTCTTCTGGG
GGCCCCGAGCACACGTGGAATCGAGCAAACTGAAAGTCATGCATTTTGTGGCAAGGGTTCGTAACCGATG
CTCTAAAGACTGGCCTTGTAATTATGACTGGGATTCGGACGATGATGCAGAGGTTGAGGCTATCCTCAAT
TCAGGTGCTAGGGGTTATTCCGCCCCTTAA

Translation (219 aa):
MPRGRKSRRRRNARAAEENRNNRKIQASEASETPMAASVVASTPEDDLSGPEEDPSTPEEASTTPEEASS
TAQAQKPSVPRSNFQGTKKSLLMSILALIFIMGNSAKEALVWKVLGKLGMQPGRQHSIFGDPKKIVTEEF
VRRGYLIYKPVPRSSPVEYEFFWGPRAHVESSKLKVMHFVARVRNRCSKDWPCNYDWDSDDDAEVEAILN
SGARGYSAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH