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Report for CCDS3900.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3900.1 Public Homo sapiens 5 RXFP3 24 110 108 CCDS HistoryNCBI Gene:51289Re-query CCDS DB by CCDS ID:3900.1Re-query CCDS DB by GeneID:51289See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3900.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000330120.5 ENSP00000328708.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000330120.5Link to Ensembl Protein Viewer:ENSP00000328708.3Re-query CCDS DB by Nucleotide ID:ENST00000330120Re-query CCDS DB by Protein ID:ENSP00000328708
Original member Current member NCBI NM_016568.3 NP_057652.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016568.3Link to Protein Sequence:NP_057652.1Re-query CCDS DB by Nucleotide ID:NM_016568Re-query CCDS DB by Protein ID:NP_057652Link to BLAST:NP_057652.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057652.1 469 Q9NSD7 469 100% 0 0

Chromosomal Locations for CCDS 3900.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 33936741 33938150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1410 nt):
ATGCAGATGGCCGATGCAGCCACGATAGCCACCATGAATAAGGCAGCAGGCGGGGACAAGCTAGCAGAAC
TCTTCAGTCTGGTCCCGGACCTTCTGGAGGCGGCCAACACGAGTGGTAACGCGTCGCTGCAGCTTCCGGA
CTTGTGGTGGGAGCTGGGGCTGGAGTTGCCGGACGGCGCGCCGCCAGGACATCCCCCGGGCAGCGGCGGG
GCAGAGAGCGCGGACACAGAGGCCCGGGTGCGGATTCTCATCAGCGTGGTGTACTGGGTGGTGTGCGCCC
TGGGGTTGGCGGGCAACCTGCTGGTTCTCTACCTGATGAAGAGCATGCAGGGCTGGCGCAAGTCCTCTAT
CAACCTCTTCGTCACCAACCTGGCGCTGACGGACTTTCAGTTTGTGCTCACCCTGCCCTTCTGGGCGGTG
GAGAACGCTCTTGACTTCAAATGGCCCTTCGGCAAGGCCATGTGTAAGATCGTGTCCATGGTGACGTCCA
TGAACATGTACGCCAGCGTGTTCTTCCTCACTGCCATGAGTGTGACGCGCTACCATTCGGTGGCCTCGGC
TCTGAAGAGCCACCGGACCCGAGGACACGGCCGGGGCGACTGCTGCGGCCGGAGCCTGGGGGACAGCTGC
TGCTTCTCGGCCAAGGCGCTGTGTGTGTGGATCTGGGCTTTGGCCGCGCTGGCCTCGCTGCCCAGTGCCA
TTTTCTCCACCACGGTCAAGGTGATGGGCGAGGAGCTGTGCCTGGTGCGTTTCCCGGACAAGTTGCTGGG
CCGCGACAGGCAGTTCTGGCTGGGCCTCTACCACTCGCAGAAGGTGCTGCTGGGCTTCGTGCTGCCGCTG
GGCATCATTATCTTGTGCTACCTGCTGCTGGTGCGCTTCATCGCCGACCGCCGCGCGGCGGGGACCAAAG
GAGGGGCCGCGGTAGCCGGAGGACGCCCGACCGGAGCCAGCGCCCGGAGACTGTCGAAGGTCACCAAATC
AGTGACCATCGTTGTCCTGTCCTTCTTCCTGTGTTGGCTGCCCAACCAGGCGCTCACCACCTGGAGCATC
CTCATCAAGTTCAACGCGGTGCCCTTCAGCCAGGAGTATTTCCTGTGCCAGGTATACGCGTTCCCTGTGA
GCGTGTGCCTAGCGCACTCCAACAGCTGCCTCAACCCCGTCCTCTACTGCCTCGTGCGCCGCGAGTTCCG
CAAGGCGCTCAAGAGCCTGCTGTGGCGCATCGCGTCTCCTTCGATCACCAGCATGCGCCCCTTCACCGCC
ACTACCAAGCCGGAGCACGAGGATCAGGGGCTGCAGGCCCCGGCGCCGCCCCACGCGGCCGCGGAGCCGG
ACCTGCTCTACTACCCACCTGGCGTCGTGGTCTACAGCGGGGGGCGCTACGACCTGCTGCCCAGCAGCTC
TGCCTACTGA

Translation (469 aa):
MQMADAATIATMNKAAGGDKLAELFSLVPDLLEAANTSGNASLQLPDLWWELGLELPDGAPPGHPPGSGG
AESADTEARVRILISVVYWVVCALGLAGNLLVLYLMKSMQGWRKSSINLFVTNLALTDFQFVLTLPFWAV
ENALDFKWPFGKAMCKIVSMVTSMNMYASVFFLTAMSVTRYHSVASALKSHRTRGHGRGDCCGRSLGDSC
CFSAKALCVWIWALAALASLPSAIFSTTVKVMGEELCLVRFPDKLLGRDRQFWLGLYHSQKVLLGFVLPL
GIIILCYLLLVRFIADRRAAGTKGGAAVAGGRPTGASARRLSKVTKSVTIVVLSFFLCWLPNQALTTWSI
LIKFNAVPFSQEYFLCQVYAFPVSVCLAHSNSCLNPVLYCLVRREFRKALKSLLWRIASPSITSMRPFTA
TTKPEHEDQGLQAPAPPHAAAEPDLLYYPPGVVVYSGGRYDLLPSSSAY


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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