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Report for CCDS50523.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50523.1 Public Mus musculus 2 Nsmf 23 108 98 CCDS HistoryNCBI Gene:56876Re-query CCDS DB by CCDS ID:50523.1Re-query CCDS DB by GeneID:56876See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50523.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114388.7 ENSMUSP00000110030.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114388.7Link to Ensembl Protein Viewer:ENSMUSP00000110030.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114388Re-query CCDS DB by Protein ID:ENSMUSP00000110030
Original member NCBI NM_001177655.1 NP_001171126.1 Updated not alive Link to Nucleotide Sequence:NM_001177655.1Link to Protein Sequence:NP_001171126.1Re-query CCDS DB by Nucleotide ID:NM_001177655Re-query CCDS DB by Protein ID:NP_001171126
Current member NCBI NM_001177655.2 NP_001171126.1 Accepted alive Link to Nucleotide Sequence:NM_001177655.2Link to Protein Sequence:NP_001171126.1Re-query CCDS DB by Nucleotide ID:NM_001177655Re-query CCDS DB by Protein ID:NP_001171126Link to BLAST:NP_001171126.1

Chromosomal Locations for CCDS 50523.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 25054601 25054671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25054998 25055059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25055636 25056136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25057101 25057176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25058253 25058321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25059021 25059073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25060139 25060263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25060479 25060562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25060692 25060725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25060814 25060884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25061059 25061138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25061262 25061364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25061493 25061568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25061672 25061769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1503 nt):
ATGGGTGCCGCCGCCTCCAGGAGGAGGGCGCTGAGGAGCGAGGCCATGTCCTCGGTAGCGGCCAAAGTAA
GAGCAGCCCGAGCGTTTGGAGAGTACCTGTCCCAGAGTCACCCTGAGAACCGCAACGGTGCAGACCACCT
GCTGGCTGACGCCTACTCTGGCCACGACGGGTCCCCAGAGATGCAACCTGCACCCCAGAACAAGCGCCGC
CTCTCCCTCGTCTCCAATGGCCGATATGAGGGCAGCATCTCAGATGAGGCAGTCAGCGGGAAGCCGGCTA
TAGAGGGCCCCCAGCCCCACGTGTACACCATCTCTAGAGAGCCCGCCCTGCTACCTGGCTCTGAAGCTGA
AGCCATTGAGCTAGCAGTGGTAAAAGGGAGGAGACAGCGGGAACGGCACCCTCACCACCACAGCCAGCCC
CTGCGTGCCAGCCCAGGCAGCAGCCGGGAGGACATCAGCAGGCCCTGCCAAAGCTGGGCAGGAAGCCGCC
AGGGCTCCAAAGAGTGCCCAGGATGTGCCCAGCTGGTCCCTGGTCCCTCTTCTCGGGCCTTTGGGCTGGA
GCAGCCACCTCTACCTGAGGCTCCTGGCCGCCACAAGAAGCTGGAAAGGATGTATAGCGTTGATGGAGTG
TCTGATGATGTCCCCATCCGTACCTGGTTCCCCAAGGAAAACCTTTTCAGCTTCCAGACGGCAACCACAA
CTATGCAAGCGGTATTCAGGGGCTACGCGGAGAGGAAGCGTCGGAAACGGGAGAATGATTCCGCGTCTGT
AATCCAGAGGAACTTCCGCAAACACCTGCGCATGGTTGGCAGTCGGCGGGTGAAGGCCCAGAGCAGTGAC
CTACAGAGCTCACACTGCACCCTGGATGAGGCTTGTGAGGACCTGGACTGGGACACAGAGAAAGGTCTGG
AGGCCATGGCCTGCAACACCGAGGGCTTCTTGCCACCCAAGGTCATGCTCATCTCCTCCAAGGTGCCAAA
GGCCGAGTATATCCCTACTATCATCCGCAGAGATGACCCGTCCATCATTCCCATCCTCTACGACCACGAG
CATGCAACCTTCGAGGACATCCTGGAGGAAATAGAGAAGAAATTGAACATCTATCACAAGGGGGCCAAGA
TCTGGAAGATGCTGATTTTCTGCCAGGGCGGCCCTGGACACCTTTATTTGCTCAAGAACAAGGTGGCCAC
CTTTGCCAAAGTGGAGAAGGAAGAGGACATGATCCACTTCTGGAAGAGGCTGAGCCGCCTGATGAGCAAG
GTGAACCCCGAGCCGAATGTCATCCACATCATGGGCTGCTACATTCTGGGGAACCCTAACGGGGAGAAGC
TATTCCAGAACCTCAGGACCCTCATGACCCCTTACAAGGTTACCTTTGAGTCGCCTCTCGAGCTGTCTGC
CCAAGGGAAGCAGATGATTGAGACCTACTTTGACTTCCGGCTGTACCGCCTGTGGAAGAGCCGCCAGCAC
TCAAAGCTGCTGGACTTTGATGACGTCCTGTGA

Translation (500 aa):
MGAAASRRRALRSEAMSSVAAKVRAARAFGEYLSQSHPENRNGADHLLADAYSGHDGSPEMQPAPQNKRR
LSLVSNGRYEGSISDEAVSGKPAIEGPQPHVYTISREPALLPGSEAEAIELAVVKGRRQRERHPHHHSQP
LRASPGSSREDISRPCQSWAGSRQGSKECPGCAQLVPGPSSRAFGLEQPPLPEAPGRHKKLERMYSVDGV
SDDVPIRTWFPKENLFSFQTATTTMQAVFRGYAERKRRKRENDSASVIQRNFRKHLRMVGSRRVKAQSSD
LQSSHCTLDEACEDLDWDTEKGLEAMACNTEGFLPPKVMLISSKVPKAEYIPTIIRRDDPSIIPILYDHE
HATFEDILEEIEKKLNIYHKGAKIWKMLIFCQGGPGHLYLLKNKVATFAKVEKEEDMIHFWKRLSRLMSK
VNPEPNVIHIMGCYILGNPNGEKLFQNLRTLMTPYKVTFESPLELSAQGKQMIETYFDFRLYRLWKSRQH
SKLLDFDDVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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