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Report for CCDS57151.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57151.1 Public Mus musculus 2 Frmd4a 23 108 98 CCDS HistoryNCBI Gene:209630Re-query CCDS DB by CCDS ID:57151.1Re-query CCDS DB by GeneID:209630See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57151.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000176828.7 ENSMUSP00000134803.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000176828.7Link to Ensembl Protein Viewer:ENSMUSP00000134803.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000176828Re-query CCDS DB by Protein ID:ENSMUSP00000134803
Original member Current member NCBI NM_001177844.1 NP_001171315.1 Accepted alive Link to Nucleotide Sequence:NM_001177844.1Link to Protein Sequence:NP_001171315.1Re-query CCDS DB by Nucleotide ID:NM_001177844Re-query CCDS DB by Protein ID:NP_001171315Link to BLAST:NP_001171315.1

Chromosomal Locations for CCDS 57151.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 4566143 4566190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4572298 4572439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4586361 4586494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4590620 4590742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4594539 4594767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4597338 4597394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4601115 4601355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4602115 4602279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4603377 4604251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4605970 4606066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4610967 4611069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2214 nt):
ATGGCTATTAGCCAGCATCAGTTCTATCTGGACAGAAAGCAGAGTAAGTCCAAGATCCATGCGGCCCGAA
GTCTGAGCGAGATCGCCATTGACCTGACGGAAACAGGGACCCTGAAGACCTCAAAGCTGGCCAACATGGG
GAGCAAGGGGAAGATCATCAGCGGGAGCAGTGGGAGTCTGCTGTCCTCAGGTTCTCAGGAATCAGATAGC
TCGCAGTCGGCCAAGAAAGACATGTTGGCTGCCTTGAAATCCAGGCAGGAAGCTCTGGAGGAGACGCTGC
GCCAGAGGCTGGAGGAACTGAAGAGATTGTGTCTCCGGGAAGCTGAACTCACAGGAAAATTGCCTGTGGA
ATATCCCCTGGATCCAGGCGAGGAACCACCTATTGTTCGGAGGAGAATTGGAACAGCCTTCAAGCTGGAT
GAACAAAAAATCCTGCCTAAAGGAGAGGAAGCTGAGCTGGAACGCCTGGAACGAGAGTTTGCGATTCAGT
CCCAGATCACAGAGGCCGCCCGCCGTCTAGCCAGTGACCCCAATGTCAGCAAAAAACTGAAGAAGCAAAG
GAAGACCTCTTATTTGAATGCACTGAAGAAGCTGCAGGAGATTGAAAATGCAATCAACGAGAACCGCATC
AAGTCAGGGAAGAAACCCACCCAGAGGGCTTCACTTGTCATCGATGATGGAAATATCGCCAGCGAAGACA
GCTCTCTCTCGGATGCCCTCGTTCTGGAAGATGAAGACTCTCAGGTTACCAGCACAATATCCCCCTTACA
GTCGCCACACAAGGGACTCCCTCCTCGGCCACCTTCATCACACAACAGGCCTCCTCCCCCACAGTCCCTG
GAGGGACTCAGGCAGCTGCACTATCACCGTACCGACTATGACAAGTCACCCTTAAAGCCCAAAATGTGGA
GCGAGTCATCTTTAGATGAGCCTTATGAGAAGGTGAAGAAACGCTCCTCCCACGGCCATTCCAGCAGCCA
CAAGCGCTTCCCCAGCACAGGAAGCTGTACCGAGGCAGGAGTAAGCAGCTCCTTGCAGAACAGTCCCATC
CGAAGCCTCCCACATTGGAATTCCCAGTCTAGCATGCCATCCACCCCAGACCTGCGCGTCCGGAGTCCCC
ACTATGTTCATTCCACAAGGTCAGTGGACATCAGCCCCACGAGACTGCACAGCCTTGCACTGCACTTTAG
GCATCGAAGCTCCAGCCTGGAGTCCCAGGGCAAGCTCCTGGGCTCGGAGAACGACACCGGAAGCCCCGAC
TTCTACACCCCGAGGACTCGTAGCAGCAATGGCTCAGACCCCATGGACGACTGCTCGTCCTGCACCAGCC
ACTCGAGCTCAGAGCACTACTACCCAGCACAGATGAACGCCAACTACTCAACGCTGGCTGAGGACTCGCC
GTCCAAGGCGCGGCAGCGACAGCGGCAGAGGCAGCGGGCAGCAGGCGCCCTGGGCTCAGCCAGCTCTGGC
AGCATGCCCAACCTGGCGGCCCGCAGCGGGGCTGCAAGCACTGGAGGTGGCGTGTACCTGCACAGCCAGA
GCCAGCCCAGCTCTCAGTACCGCATCAAGGAGTACCCACTATATATCGAGGGCAGTGCCACACCCGTGGT
GGTACGCAGCCTGGAGAGCGACCAGGAGGGCCACTACAGCGTCAAAGCGCAGTTTAAGACCTCCAACTCT
TACACAGCTGGCGGCCTGTTCAAAGAGAGCTGGCGCGGGGGTGGCGACGAGGGGGATGCAGGCCGCCTTA
CACCATCTCGGTCTCAGATCCTGCGGACTCCTTCGTTGGGGCGTGACGGCGCCCACGACAAAGGCTCCGG
CCGTGCCGCCGTGTCTGATGAGCTGCGCCAGTGGTACCAGCGCTCCACAGCCTCGCATAAGGAGCACAGC
CGTCTGTCACACACCAGCTCCACCTCCTCGGACAGCGGCTCTCAGTACAGCACCTCTTCCCAGAGCACCT
TCGTGGCGCACAGCAGGGTCACCAGGATGCCCCAGATGTGCAAGGCCACGTCAGCTGCCTTACCTCAAAG
CCAGAGAAGCTCAACACCGTCCAGTGAAATTGGAGCCACCCCACCAAGCAGCCCCCACCACATCCTGACC
TGGCAGACTGGGAGCTACAGTGACAGCTGCTTCCTGGATTCCTCCCTCTATCCAGAGCTAGCTGATGTCC
AATGGTACGGGCAGGAAAAAGCCAAGCCCGGGACCCTCGTGTGA

Translation (737 aa):
MAISQHQFYLDRKQSKSKIHAARSLSEIAIDLTETGTLKTSKLANMGSKGKIISGSSGSLLSSGSQESDS
SQSAKKDMLAALKSRQEALEETLRQRLEELKRLCLREAELTGKLPVEYPLDPGEEPPIVRRRIGTAFKLD
EQKILPKGEEAELERLEREFAIQSQITEAARRLASDPNVSKKLKKQRKTSYLNALKKLQEIENAINENRI
KSGKKPTQRASLVIDDGNIASEDSSLSDALVLEDEDSQVTSTISPLQSPHKGLPPRPPSSHNRPPPPQSL
EGLRQLHYHRTDYDKSPLKPKMWSESSLDEPYEKVKKRSSHGHSSSHKRFPSTGSCTEAGVSSSLQNSPI
RSLPHWNSQSSMPSTPDLRVRSPHYVHSTRSVDISPTRLHSLALHFRHRSSSLESQGKLLGSENDTGSPD
FYTPRTRSSNGSDPMDDCSSCTSHSSSEHYYPAQMNANYSTLAEDSPSKARQRQRQRQRAAGALGSASSG
SMPNLAARSGAASTGGGVYLHSQSQPSSQYRIKEYPLYIEGSATPVVVRSLESDQEGHYSVKAQFKTSNS
YTAGGLFKESWRGGGDEGDAGRLTPSRSQILRTPSLGRDGAHDKGSGRAAVSDELRQWYQRSTASHKEHS
RLSHTSSTSSDSGSQYSTSSQSTFVAHSRVTRMPQMCKATSAALPQSQRSSTPSSEIGATPPSSPHHILT
WQTGSYSDSCFLDSSLYPELADVQWYGQEKAKPGTLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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