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Report for CCDS10173.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10173.1 Public Homo sapiens 15 GTF2A2 24 110 108 CCDS HistoryNCBI Gene:2958Re-query CCDS DB by CCDS ID:10173.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10173.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396060.7 ENSP00000379372.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000396060.7Link to Ensembl Protein Viewer:ENSP00000379372.2Re-query CCDS DB by Nucleotide ID:ENST00000396060Re-query CCDS DB by Protein ID:ENSP00000379372
Original member Current member EBI ENST00000396061.5 ENSP00000379373.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396061.5Link to Ensembl Protein Viewer:ENSP00000379373.1Re-query CCDS DB by Nucleotide ID:ENST00000396061Re-query CCDS DB by Protein ID:ENSP00000379373
Original member Current member EBI ENST00000396063.5 ENSP00000379375.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396063.5Link to Ensembl Protein Viewer:ENSP00000379375.1Re-query CCDS DB by Nucleotide ID:ENST00000396063Re-query CCDS DB by Protein ID:ENSP00000379375
Original member Current member NCBI NM_001320929.2 NP_001307858.1 Accepted alive Link to Nucleotide Sequence:NM_001320929.2Link to Protein Sequence:NP_001307858.1Re-query CCDS DB by Nucleotide ID:NM_001320929Re-query CCDS DB by Protein ID:NP_001307858Link to BLAST:NP_001307858.1
Original member Current member NCBI NM_001320930.2 NP_001307859.1 Accepted alive Link to Nucleotide Sequence:NM_001320930.2Link to Protein Sequence:NP_001307859.1Re-query CCDS DB by Nucleotide ID:NM_001320930Re-query CCDS DB by Protein ID:NP_001307859Link to BLAST:NP_001307859.1
Original member Current member NCBI NM_004492.3 NP_004483.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004492.3Link to Protein Sequence:NP_004483.1Re-query CCDS DB by Nucleotide ID:NM_004492Re-query CCDS DB by Protein ID:NP_004483Link to BLAST:NP_004483.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001307858.1 109 P52657 109 100% 0 0
NP_001307859.1 109 P52657 109 100% 0 0
NP_004483.1 109 P52657 109 100% 0 0

Chromosomal Locations for CCDS 10173.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 59639132 59639157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 59642136 59642262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 59650669 59650773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 59652206 59652277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (330 nt):
ATGGCATATCAGTTATACAGAAATACTACTTTGGGAAACAGTCTTCAGGAGAGCCTAGATGAGCTCATAC
AGTCTCAACAGATCACCCCCCAACTTGCCCTTCAAGTTCTACTTCAGTTTGATAAGGCTATAAATGCAGC
ACTGGCTCAGAGGGTCAGGAACAGAGTCAATTTCAGGGGCTCTCTAAATACGTACAGATTCTGCGATAAT
GTGTGGACTTTTGTACTGAATGATGTTGAATTCAGAGAGGTGACAGAACTTATTAAAGTGGATAAAGTGA
AAATTGTAGCCTGTGATGGTAAAAATACTGGCTCCAATACTACAGAATGA

Translation (109 aa):
MAYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRVRNRVNFRGSLNTYRFCDN
VWTFVLNDVEFREVTELIKVDKVKIVACDGKNTGSNTTE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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