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Report for CCDS47540.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47540.1 Public Homo sapiens 7 NXPH1 24 110 108 CCDS HistoryNCBI Gene:30010Re-query CCDS DB by CCDS ID:47540.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47540.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000405863.6 ENSP00000384551.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000405863.6Link to Ensembl Protein Viewer:ENSP00000384551.1Re-query CCDS DB by Nucleotide ID:ENST00000405863Re-query CCDS DB by Protein ID:ENSP00000384551
Original member Current member NCBI NM_152745.3 NP_689958.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152745.3Link to Protein Sequence:NP_689958.1Re-query CCDS DB by Nucleotide ID:NM_152745Re-query CCDS DB by Protein ID:NP_689958Link to BLAST:NP_689958.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689958.1 271 P58417 271 100% 0 0

Chromosomal Locations for CCDS 47540.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 8435714 8435767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 8751008 8751769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (816 nt):
ATGCAGGCTGCGTGCTGGTACGTGCTTTTCCTCCTGCAGCCCACCGTCTACTTGGTCACATGTGCCAATT
TAACGAACGGTGGAAAGTCAGAACTTCTGAAATCAGGAAGCAGCAAATCCACACTAAAGCACATATGGAC
AGAAAGCAGCAAAGACTTGTCTATCAGCCGACTCCTGTCACAGACTTTTCGTGGCAAAGAGAATGATACA
GATTTGGACCTGAGATATGACACCCCAGAACCTTATTCTGAGCAAGACCTCTGGGACTGGCTGAGGAACT
CCACAGACCTTCAAGAGCCTCGGCCCAGGGCCAAGAGAAGGCCCATTGTTAAAACGGGCAAGTTTAAGAA
AATGTTTGGATGGGGCGATTTTCATTCCAACATCAAAACAGTGAAGCTGAACCTGTTGATAACTGGGAAA
ATTGTAGATCATGGCAATGGGACATTTAGTGTTTATTTCAGGCATAATTCAACTGGTCAAGGGAATGTAT
CTGTCAGCTTGGTACCCCCTACAAAAATCGTGGAATTTGACTTGGCACAACAAACCGTGATTGATGCCAA
AGATTCCAAGTCTTTTAATTGTCGCATTGAATATGAAAAGGTTGACAAGGCTACCAAGAACACACTCTGC
AACTATGACCCTTCAAAAACCTGTTACCAGGAGCAAACCCAAAGTCATGTATCCTGGCTCTGCTCCAAGC
CCTTTAAGGTGATCTGTATTTACATTTCCTTTTATAGTACAGATTATAAACTGGTACAGAAAGTGTGCCC
TGACTACAACTACCACAGTGACACACCTTACTTTCCCTCGGGATGA

Translation (271 aa):
MQAACWYVLFLLQPTVYLVTCANLTNGGKSELLKSGSSKSTLKHIWTESSKDLSISRLLSQTFRGKENDT
DLDLRYDTPEPYSEQDLWDWLRNSTDLQEPRPRAKRRPIVKTGKFKKMFGWGDFHSNIKTVKLNLLITGK
IVDHGNGTFSVYFRHNSTGQGNVSVSLVPPTKIVEFDLAQQTVIDAKDSKSFNCRIEYEKVDKATKNTLC
NYDPSKTCYQEQTQSHVSWLCSKPFKVICIYISFYSTDYKLVQKVCPDYNYHSDTPYFPSG


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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