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Report for CCDS55886.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55886.1 Public Homo sapiens 12 TMEM116 24 110 108 CCDS HistoryNCBI Gene:89894Re-query CCDS DB by CCDS ID:55886.1Re-query CCDS DB by GeneID:89894See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55886.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355445.7 ENSP00000347620.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000355445.7Link to Ensembl Protein Viewer:ENSP00000347620.2Re-query CCDS DB by Nucleotide ID:ENST00000355445Re-query CCDS DB by Protein ID:ENSP00000347620
Original member Current member NCBI NM_001193453.2 NP_001180382.1 Accepted alive Link to Nucleotide Sequence:NM_001193453.2Link to Protein Sequence:NP_001180382.1Re-query CCDS DB by Nucleotide ID:NM_001193453Re-query CCDS DB by Protein ID:NP_001180382Link to BLAST:NP_001180382.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001180382.1 302 Q8NCL8-3 302 100% 0 0

Chromosomal Locations for CCDS 55886.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 111931621 111931827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111932586 111932659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111933886 111934030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111936692 111936830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111937160 111937243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111938161 111938210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111991758 111991889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112003800 112003863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112005257 112005270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (909 nt):
ATGGCTACTCTGAGTGTTATAGGTTCAAGTTCACTTATTGCCTATGCTGTATTCCATAATATACAGAAAT
CTCCAGAGATAAGACCACTTTTTTATCTGAGCTTCTGTGACCTGCTCCTGGGACTTTGCTGGCTCACGGA
GACACTTCTCTATGGAGCTTCAGTAGCAAATAAGGACATCATCTGCTATAACCTACAAGCAGTTGGACAG
GTGATAGATTATACTTGTCGAGTTTGTCAAATGGCCTTTGTTTTCTCAAGCCTGATACCTCTGCTATTGA
TGACACCTGTATTCTGTCTGGGAAATACTAGTGAATGTTTCCAAAACTTCAGTCAGAGCCACAAGTGTAT
CTTGATGCACTCACCACCATCAGCCATGGCTGAACTTCCACCTTCTGCCAACACATCTGTCTGTAGCACA
CTTTATTTTTATGGTATCGCCATTTTCCTGGGCAGCTTTGTACTCAGCCTCCTTACCATTATGGTCTTAC
TTATCCGAGCCCAGACATTGTATAAGAAGTTTGTGAAGTCAACTGGCTTTCTGGGGAGTGAACAGTGGGC
AGTGATTCACATTGTGGACCAACGGGTGCGCTTCTACCCAGTGGCCTTCTTTTGCTGCTGGGGCCCAGCT
GTCATTCTAATGATCATAAAGCTGACTAAGCCACAGGACACCAAGCTTCACATGGCCCTTTATGTTCTCC
AGGCTCTAACGGCAACATCTCAGGGTCTACTCAACTGTGGAGTATATGGCTGGACGCAGCACAAATTCCA
CCAACTAAAGCAGGAGGCTCGGCGTGATGCAGATACCCAGACACCATTATTATGCTCACAGAAGAGATTC
TATAGCAGGGGCTTAAATTCACTGGAATCCACCCTGACTTTTCCTGCCAGTACTTCTACCATTTTTTGA

Translation (302 aa):
MATLSVIGSSSLIAYAVFHNIQKSPEIRPLFYLSFCDLLLGLCWLTETLLYGASVANKDIICYNLQAVGQ
VIDYTCRVCQMAFVFSSLIPLLLMTPVFCLGNTSECFQNFSQSHKCILMHSPPSAMAELPPSANTSVCST
LYFYGIAIFLGSFVLSLLTIMVLLIRAQTLYKKFVKSTGFLGSEQWAVIHIVDQRVRFYPVAFFCCWGPA
VILMIIKLTKPQDTKLHMALYVLQALTATSQGLLNCGVYGWTQHKFHQLKQEARRDADTQTPLLCSQKRF
YSRGLNSLESTLTFPASTSTIF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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