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Report for CCDS39718.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39718.1 Public Mus musculus 6 Far2 23 108 98 CCDS HistoryNCBI Gene:330450Re-query CCDS DB by CCDS ID:39718.1Re-query CCDS DB by GeneID:330450See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39718.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111607.3 ENSMUSP00000107234.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111607.3Link to Ensembl Protein Viewer:ENSMUSP00000107234.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000111607Re-query CCDS DB by Protein ID:ENSMUSP00000107234
Original member Current member NCBI NM_178797.4 NP_848912.1 Accepted alive Link to Nucleotide Sequence:NM_178797.4Link to Protein Sequence:NP_848912.1Re-query CCDS DB by Nucleotide ID:NM_178797Re-query CCDS DB by Protein ID:NP_848912Link to BLAST:NP_848912.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848912.1 502 Q7TNT2-2 502 100% 0 0

Chromosomal Locations for CCDS 39718.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 148138573 148138761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148146014 148146189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148150590 148150769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148157363 148157540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148157912 148157956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148158919 148159037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148159667 148159734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148165574 148165745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148173398 148173527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148173901 148174028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148175046 148175148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148180986 148181006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1509 nt):
ATGTCCATGATCGCAGCTTTCTACAGCAACAAGTCTATCCTCATCACAGGGGCCACAGGCTTCCTGGGCA
AGGTGCTCATGGAGAAGTTATTCCGTACCAGCCCCCACTTGAAAGTCATTTACATCCTCGTGAGACCCAA
GTCTGGACAGACACTGCAGGAAAGGGTTTTCCAGATCCTCAACAGTAAGCTGTTTGAGAAAGTCAAAGAA
GTCTGTCCAAATGTGCATGAGAAGATCAGACCCATCTCCGCAGACCTCAACCAGCGTGACTTCGCCATCA
GCAAGGAAGACGTGCAAGAACTTCTGTCCTGTACCAATATTATCTTCCACTGTGCAGCCACAGTGCGCTT
TGATGCACATCTGAGAGAAGCTGTGCAGCTGAACGTCACGGCCACCCAGCAGCTCCTGCTAATGGCCAGC
CAGATGCCAAAGCTGGAAGCCTTCATCCACATCTCCACTGCCTTTTCCAACTGCAACCTGAGCCACATTG
ATGAGGTCATCTACCCATGCCCTGTGGAGCCAAGAAAGATCATTGACTCCATGGAGTGGTTAGATGACTC
TATCATTGAAGAGATCACTCCTAAGCTGATTGGGGACCGGCCCAATACCTACACCTACACCAAAGCCTTG
GGAGAGATAGTAGTGCAGCAAGAGAGCGGAAACCTGAATGTGGCCATTGTCAGGCCATCCATAGTGGGAG
CAACCTGGCAGGAGCCTTTCCCGGGTTGGGTTGATAATCTAAATGGACCCAGCGGACTCATTATTGCGAC
TGGGAAAGGATTTCTTCGGTCCATAAAAGCGACTCCCATGGCAGTGGCAGATGTGATTCCAGTTGACACA
GTTGTTAATCTCACCATAGCAGTAGGATGGTATACTGCAGTTCATAGGCCTAAATCAACATTAATCTACC
ATTCCACATCTGGTAATCTCAATCCCTGTAACTGGTATAAAATGGGATTACAGGTCTTGGCGACCATCGA
AAAGATCCCATTTGAGAGTGCTTTCAGAAGGCCAAATGCTGACTTCACCACCAGCAATTTCACCACCCAT
TATTGGAACACCGTCAGCCACCGGGTCCCAGCCATCATCTATGACTTCTATCTGAGGCTTACTGGAAGGA
AACCCAGAATGCTGAAGCTCATGAACCGGCTGCTAAAAACCATTTCCATGCTGGAGTATTTCATCAACCA
CAGTTGGGAATGGAGCACAAACAACACGGAGATGCTTCTGTCAGAGCTCAGTCCTGAAGACCAGAGAGTA
TTCAACTTTGATGTGCGTCAGTTGAACTGGCTCGAATACATTGAAAATTACGTTTTGGGGGTTAAGAAGT
ATCTACTAAAAGAGGATCTGGCCGGTATCCCCAAAGCAAAGCAACACCTAAGAAGGCTCCGGAACATTCA
CTACCTCTTTAACACTGCCCTGTTTCTTATCATCTGGCGCCTCCTCATTGCAAGGTCTCAGATGGCTCGG
AACGTCTGGTTCTTCATTTGTCCCTTGTTCAAGCTGTGA

Translation (502 aa):
MSMIAAFYSNKSILITGATGFLGKVLMEKLFRTSPHLKVIYILVRPKSGQTLQERVFQILNSKLFEKVKE
VCPNVHEKIRPISADLNQRDFAISKEDVQELLSCTNIIFHCAATVRFDAHLREAVQLNVTATQQLLLMAS
QMPKLEAFIHISTAFSNCNLSHIDEVIYPCPVEPRKIIDSMEWLDDSIIEEITPKLIGDRPNTYTYTKAL
GEIVVQQESGNLNVAIVRPSIVGATWQEPFPGWVDNLNGPSGLIIATGKGFLRSIKATPMAVADVIPVDT
VVNLTIAVGWYTAVHRPKSTLIYHSTSGNLNPCNWYKMGLQVLATIEKIPFESAFRRPNADFTTSNFTTH
YWNTVSHRVPAIIYDFYLRLTGRKPRMLKLMNRLLKTISMLEYFINHSWEWSTNNTEMLLSELSPEDQRV
FNFDVRQLNWLEYIENYVLGVKKYLLKEDLAGIPKAKQHLRRLRNIHYLFNTALFLIIWRLLIARSQMAR
NVWFFICPLFKL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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