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Report for CCDS32945.2 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
32945.2 |
Public |
Homo sapiens |
19 |
NWD1 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:284434](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:32945.2](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:284434](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 19 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public Note for CCDS 32945.1 |
The coding region has been updated to represent an alternate splice pattern that is more supported by the available transcript and protein data. |
Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration) Sequence IDs included in CCDS 32945.2
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000379808.7 |
ENSP00000369136.3 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000379808.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000369136.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000379808](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000369136](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000524140.7 |
ENSP00000428579.2 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000524140.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000428579.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000524140](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000428579](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000673803.1 |
ENSP00000501265.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000673803.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000501265.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000673803](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000501265](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001007525.5 |
NP_001007526.3 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001007525.5](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001007526.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001007525](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001007526](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001007526.3](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_001007526.3 |
1432 |
Q149M9-3 |
1432 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 32945.2
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (4299 nt): ATGCAGAGAGGGAAGCCCTGCAGAGCACTGCCTACCCTGAAGTGCCAGACCTTCTGCCAGAGGCACGGCT TGATGTTTGAGGTCGTTGATCTGAGGTGGGGTATTCGGAACATTGAAGCCACTGACCACTTGACCACAGA ACTCTGCTTGGAGGAGGTTGACCGGTGTTGGAAAACATCCATAGGGCCAGCTTTTGTTGCCCTCATCGGT GATCAGTACGGCCCCTGTCTGATTCCCTCGCGGATCGATGAGAAGGAGTGGGAGGTATTGAGGGACCATC TGACTGCCAGGCCAAGTGACCTGGAGCTGGTGGCACGATACTTCCAGAGGGACGAGAATGCGTTTCCTCC CACCTACGTCCTGCAGGCACCAGGTACTGGGGAGGCCTGTGAACCAGAGGAGGCCACCTTAACTTCTGTC CTACGCTCTGGAGCCCAGGAGGCCCGGAGGCTGGGGCTCATCACCCAGGAGCAGTGGCAGCACTACCACC GGTCAGTCATTGAGTGGGAGATAGAGCGGAGCCTGCTGAGCTCAGAGGACCGGGAACAGGGAGCCACCGT CTTCCTTAGAGAGATCCAAGACCTCCACAAACACATCCTTGAAGACTGCGCCCTTAGGATGGTGGACCGG CTCGCGGATGGCTGCCTGGACGCTGATGCCCAGAACCTTCTCAGCAGCCTCAAAAGTCACATCACTGACA TGCACCCAGGGGTCCTCAAGACCCACCGCCTGCCGTGGAGCCGCGACTTGGTGAACCCCAAGAACAAGAC TCACGCCTGCTACCTGAAGGAGCTGGGTGAGCAGTTTGTGGTGAGGGCCAATCACCAGGTCCTCACACGC CTCCGTGAGCTGGATACGGCCGGACAGGAGTTGGCGTGGCTCTACCAAGAGATCCGCCACCACCTTTGGC AGAGCTCGGAGGTCATTCAGACCTTCTGCGGACGCCAGGAACTCCTGGCCCGGCTTGGGCAGCAGCTCAG GCACGATGACAGCAAGCAGCACACCCCCCTGGTACTCTTTGGGCCCCCAGGCATTGGAAAGACAGCCCTG ATGTGCAAGCTGGCTGAGCAGATGCCAAGGCTGCTGGGGCACAAGACAGTGACCGTCCTGCGGCTGCTGG GGACGTCACAAATGAGCTCAGATGCCCGTGGCCTGCTGAAGAGCATCTGCTTCCAGGTGTGCCTGGCCTA TGGGCTGCCCTTGCCCCCTGCCCAGGTTCTGGACGCCCACACCAGGGTGGTCCAGTTTTTCCATACCCTC CTCCACACTGTCTCTTGCAGAAACTTCGAGTCTCTCGTGCTCCTGCTGGATGCTATGGATGACCTGGACT CTGTCCGCCATGCTCGGAGGGTTCCCTGGCTGCCTCTCAACTGCCCCCCGAGGGTGCACCTCATCCTCTC AGCTTGCTCGGGGGCACTGGGGGTTTTGGACACCTTGCAGCGGGTGCTCCTGGACCCGGAGGCCTACTGG GAGGTGAAGCCCCTTTCCGGAAACCAAGGCCAGCAGATGATCCAACTCCTGCTGGCAGCTGCAAGGAGGA CGCTGAGCCCGGTGCACACAGATTTGCTCTGGGCCAGCCTCCCAGAGTGTGGGAACCCAGGGCGGCTGAG GCTGGCGTTTGAGGAAGCCCGGAAATGGGCCTCTTTCACCGTGCCTGTCCCGCTGGCCACCACCGCAGAG GAAGCCACGCACCAACTCTGCACCCGCCTGGAGCAGACACACGGGCAGCTCCTCGTGGCCCACGTGCTGG GCTACATTGTGTCTTCCCGACACGGTCTCTCGGAGGCGGAGCTGAAGGATGTTTTGTCCCTGGACGACGA GGTCCTGCAGGATGTGTACCGAGATTGGACCCCGCCCAGCAAGGAGCTGCTGCGCTTCCCGCCCCTGCTG TGGGTGCGGCTTCGTCGGGATCTGGGATACTACTTGGCCCGGCGGCCCGTGGATGGCTTCACCCTCCTGG CCATTGCCCACAGACAGCTGGTCGAGGTGGTCCGTGAGCGCTACCTGTCAGGATCCGAGAGAGCCAAGAG GCATGGCGTCCTGGCCGACTTCTTCTCAGGGACCTGGAGCCAGGGTACCAAGAAGCTCATCACTCTGCCA CTTGTGGGGAAACCACTGAACTTGGACCGAAAGGTGGCCCCGCAGCCTCTGTGGTTCTCACATACGGTTG CAAACCTGCGGAAGCTGAAGGAGTTGCCCTATCACCTGCTTCACTCGGGCCGCCTGGAGGAGCTGAAACA GGAGGTTCTGGGCAGCATGAGCTGGATTTCCTGCCGGGGCATCTCTGGGGGCATTGAAGACCTGCTGGAT GACTTTGACCTGTGTGCCCCTCACCTGGACTCCCCTGAGGTTGGCCTGGTCCGTGAAGCCCTCCAGCTCT GCCGCCCTGCTGTGGAGCTCCGAGGCATGGAGAGGAGCCTCCTGTACACAGAACTGCTGGCCAGACTCCA TTTCTTCGCCACCTCACATCCAGCACTGGTGGGACAGCTATGCCAACAGGCCCAGAGCTGGTTCCAGTTG TGCGCACACCCTGTGCTGGTGCCCCTCGGAGGATTCCTCCAGCCCCCGGGAGGACCCCTCCGGGCAACTC TCAGCGGCTGTCACAAAGGCATCACCGCCATGGCATGGGGTGTGGAGGAGAAGCTGCTGGTGATTGGCAC CCAGGATGGCATCATGGCTGTGTGGGACATGGAAGAGCAGCATGTGATCCACATGCTAACTGGACACACA GGAGAGGTGAGGTGTGTGAAAATATTTGCCAAAGGGACCCTCGCCAACTCTGCTTCAAAGGATTACACGC TGCACTTGTGGAACTTACTCTCTGGCCAGGAGAAATTTACCATTTGGGATGGAGGCTCAAAAAATCCCGC TGAACCTCAGATCTGGAACCTTCATGTGGATGAGGCACACAAAGTTGTGTATTCAGCATCTGGCTCAAAG ATCAATGCTTGGAATCTGGAAACTGCAGAGCCGGTATTCCATATCCTGGGAGATGCCTCTGATCCTTGGA TGTGCATGGCCGTGCTGGCCTCCCAGGCCACACTGCTGACAGTGTCCAGGGATGGTGTGGTCAGTCTGTG GAGCTCAGCTACGGGAAAACTTCAGGGGAAGCAACATATGTCCAGCATCAAAGAAGAAACACCTACCTGT GCCGTCTCAGTCCAGAAGCAAGGAAAGCTTGTTACCGGGTTTAGCAATGGCTCCATCTCTTTGGTTTCCT CCAAAGGGGACAGATTGCTGGAGAAGCTTCCAGATGCTGTGAGGTTCCTGGTGGTCTCTGAAGATGAGTC CCTCCTCGCCGCAGGCTTTGGAAGATCGGTGCGGATATTCTTGGCGGACTCGAGGGGCTTTCGCCGATTC ATGGCCATGGATCTGGAACATGAAGACATGGTGGAGACGGCTGTTTTTGGTACTGAGAACAACCTGATCA TCACGGGGTCCCTTGATGCGCTCATTCAGGTGTGGAGTCTGTCAGAACAGGGGACCCTTCTGGACATCCT GGAAGGCGTCGGGGCCCCCGTGAGCCTGCTGGCCCGCGGCGGGGCTTTGGTGGCATCTGCTTCCCCACAG TCCTCATCTTTCAAGGTCTGGGATCTCAGCGATGCTCATAGGTCCCGGGTGCCTGCACCATTTCTGGACC GCACCGGCCTCACCGCAGTGTCCCACAATGGAAGCTACGTCTACTTCCCCAAAATTGGGGACAAAAACAA AGTCACTATTTGGGACTTGGCAGAAGGCGAGGAACAAGATTCCCTGGACACCTCCAGTGAGATCAGGTGT CTGGAGGTTGCTGAGCAGCGCAAGCTCCTATTTACGGGCCTCGTGTCGGGGGTCGTCCTTGTGTTCCCCC TGAATTCCAGGCAGGACGTGATATGCATTCCCCCTCCCGAGGCCCGGAAAGCAATCAACTGCATGTCCCT GAGCAAGTGCGAGGACCGCCTGGCCATCGCCTATGACAACATCGTCCTGGTGCTGGACATCACCTCCGGG GACCCCTGCCCGGTCATCGATGGGCCAAGATACACCTTTTACACTCAGCTGCCCGAGACCCTCTCCAGCG TGGCCATTCTGACGGACTACCGCGTGGTCTACAGCATGACCAATGGGGACCTCTTTCTTTACGAGTGTGC AACTTCCAAAGCGTTTCCCTTGGAGACCCACAGGAGCCGAGTTGCCTGTGTGGAGGTCAGCCACAAGGAG CAGCTGGTGGTCAGCGGGTCTGAGGATGCCCTGCTGTGTCTCTGGGACCTGCAGGCACGCAAGTGGAAAT TCGAGATGAGCTACACGGCACCCTGCTGA
Translation (1432 aa): MQRGKPCRALPTLKCQTFCQRHGLMFEVVDLRWGIRNIEATDHLTTELCLEEVDRCWKTSIGPAFVALIG DQYGPCLIPSRIDEKEWEVLRDHLTARPSDLELVARYFQRDENAFPPTYVLQAPGTGEACEPEEATLTSV LRSGAQEARRLGLITQEQWQHYHRSVIEWEIERSLLSSEDREQGATVFLREIQDLHKHILEDCALRMVDR LADGCLDADAQNLLSSLKSHITDMHPGVLKTHRLPWSRDLVNPKNKTHACYLKELGEQFVVRANHQVLTR LRELDTAGQELAWLYQEIRHHLWQSSEVIQTFCGRQELLARLGQQLRHDDSKQHTPLVLFGPPGIGKTAL MCKLAEQMPRLLGHKTVTVLRLLGTSQMSSDARGLLKSICFQVCLAYGLPLPPAQVLDAHTRVVQFFHTL LHTVSCRNFESLVLLLDAMDDLDSVRHARRVPWLPLNCPPRVHLILSACSGALGVLDTLQRVLLDPEAYW EVKPLSGNQGQQMIQLLLAAARRTLSPVHTDLLWASLPECGNPGRLRLAFEEARKWASFTVPVPLATTAE EATHQLCTRLEQTHGQLLVAHVLGYIVSSRHGLSEAELKDVLSLDDEVLQDVYRDWTPPSKELLRFPPLL WVRLRRDLGYYLARRPVDGFTLLAIAHRQLVEVVRERYLSGSERAKRHGVLADFFSGTWSQGTKKLITLP LVGKPLNLDRKVAPQPLWFSHTVANLRKLKELPYHLLHSGRLEELKQEVLGSMSWISCRGISGGIEDLLD DFDLCAPHLDSPEVGLVREALQLCRPAVELRGMERSLLYTELLARLHFFATSHPALVGQLCQQAQSWFQL CAHPVLVPLGGFLQPPGGPLRATLSGCHKGITAMAWGVEEKLLVIGTQDGIMAVWDMEEQHVIHMLTGHT GEVRCVKIFAKGTLANSASKDYTLHLWNLLSGQEKFTIWDGGSKNPAEPQIWNLHVDEAHKVVYSASGSK INAWNLETAEPVFHILGDASDPWMCMAVLASQATLLTVSRDGVVSLWSSATGKLQGKQHMSSIKEETPTC AVSVQKQGKLVTGFSNGSISLVSSKGDRLLEKLPDAVRFLVVSEDESLLAAGFGRSVRIFLADSRGFRRF MAMDLEHEDMVETAVFGTENNLIITGSLDALIQVWSLSEQGTLLDILEGVGAPVSLLARGGALVASASPQ SSSFKVWDLSDAHRSRVPAPFLDRTGLTAVSHNGSYVYFPKIGDKNKVTIWDLAEGEEQDSLDTSSEIRC LEVAEQRKLLFTGLVSGVVLVFPLNSRQDVICIPPPEARKAINCMSLSKCEDRLAIAYDNIVLVLDITSG DPCPVIDGPRYTFYTQLPETLSSVAILTDYRVVYSMTNGDLFLYECATSKAFPLETHRSRVACVEVSHKE QLVVSGSEDALLCLWDLQARKWKFEMSYTAPC
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