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Report for CCDS47909.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47909.1 Public Homo sapiens 8 OXR1 24 110 108 CCDS HistoryNCBI Gene:55074Re-query CCDS DB by CCDS ID:47909.1Re-query CCDS DB by GeneID:55074See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47909.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000531443.6 ENSP00000431966.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000531443.6Link to Ensembl Protein Viewer:ENSP00000431966.1Re-query CCDS DB by Nucleotide ID:ENST00000531443Re-query CCDS DB by Protein ID:ENSP00000431966
Original member Current member NCBI NM_018002.3 NP_060472.2 Accepted alive Link to Nucleotide Sequence:NM_018002.3Link to Protein Sequence:NP_060472.2Re-query CCDS DB by Nucleotide ID:NM_018002Re-query CCDS DB by Protein ID:NP_060472Link to BLAST:NP_060472.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060472.2 846 Q8N573-5 846 100% 0 0

Chromosomal Locations for CCDS 47909.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 106359614 106359636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106518943 106519139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106679210 106679292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106683199 106683306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106684246 106684359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106692728 106692877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106702906 106703090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106706382 106707145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106710622 106710790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106713823 106713985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106739458 106739583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106740343 106740495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106742222 106742317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106745789 106745862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106750806 106750941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2541 nt):
ATGTCTGTGTCTAATCTATCATGGCTGAAGAAAAAGTCCCAGTCGGTGGATATTAATGCTCCAGGGTTCA
ACCCTTTGGCTGGTGCAGGAAAGCAAACACCACAAGCCAGTAAGCCCCCGGCACCCAAGACCCCCATCAT
TGAAGAAGAGCAGAACAATGCAGCAAATACTCAGAAACATCCTTCCAGAAGGAGCGAACTGAAGAGGTTC
TACACAATTGACACTGGCCAAAAGAAGACCCTAGACAAGAAAGATGGAAGACGAATGTCTTTTCAGAAAC
CTAAAGGGACTATTGAGTATACTGTTGAATCAAGGGATTCTTTGAATAGCATAGCCCTGAAGTTTGATAC
AACACCTAACGAACTTGTTCAATTAAATAAGTTATTCTCCCGAGCAGTTGTTACTGGACAGGTTCTGTAT
GTTCCTGATCCTGAATATGTCTCCAGTGTTGAGAGCTCTCCATCTCTAAGCCCCGTAAGTCCTCTGTCAC
CAACATCATCTGAGGCTGAATTTGATAAGACCACTAATCCTGATGTCCATCCAACAGAAGCAACTCCCTC
ATCTACTTTCACTGGTATTCGACCTGCACGAGTTGTATCTTCAACTTCTGAGGAGGAGGAAGCATTTACT
GAGAAATTTCTTAAAATTAATTGCAAATATATTACCAGTGGCAAGGGCACAGTCAGTGGTGTGCTGCTAG
TTACACCAAATAATATAATGTTTGATCCACATAAAAATGACCCTTTGGTTCAAGAGAATGGCTGTGAGGA
ATATGGCATCATGTGTCCAATGGAAGAGGTGATGTCAGCTGCAATGTACAAAGAAATTTTGGATAGCAAA
ATAAAGGAATCTTTACCCATAGATATAGATCAGCTATCAGGAAGGGACTTCTGCCATTCAAAGAAAATGA
CAGGAAGTAACACTGAGGAAATAGACTCAAGAATCCGAGATGCAGGTAATGATAGTGCCAGCACTGCTCC
TAGGAGCACTGAGGAGTCTCTTTCTGAAGATGTGTTCACAGAATCAGAACTTTCCCCTATACGAGAGGAG
CTTGTATCTTCAGATGAACTGCGACAAGATAAATCTTCTGGTGCGTCATCAGAATCTGTGCAAACTGTCA
ATCAGGCTGAAGTAGAAAGTCTGACAGTCAAATCAGAATCTACTGGTACTCCTGGTCACTTAAGATCTGA
TACTGAACATTCTACAAATGAAGTTGGGACTTTATGTCATAAAACTGATTTAAATAATCTTGAAATGGCC
ATTAAGGAAGATCAGATTGCAGATAACTTTCAAGGAATATCAGGTCCTAAAGAAGACAGCACAAGTATAA
AAGGTAATTCAGACCAGGATTCTTTTCTTCATGAGAATTCGTTACACCAAGAAGAGAGTCAAAAAGAAAA
TATGCCTTGTGGGGAAACAGCAGAATTTAAACAAAAGCAAAGTGTTAACAAAGGAAAACAAGGAAAGGAG
CAAAATCAGGACTCACAGACAGAGGCAGAAGAGCTACGCAAACTTTGGAAAACCCATACTATGCAACAAA
CTAAACAGCAAAGGGAAAATATTCAACAAGTGTCACAAAAAGAAGCTAAGCATAAAATTACATCTGCTGA
TGGACACATAGAAAGTTCTGCACTTTTAAAAGAAAAGCAAAGGCATCGATTACATAAGTTCTTGTGTCTC
AGAGTTGGAAAACCAATGAGGAAAACGTTTGTATCTCAAGCAAGTGCTACAATGCAACAGTATGCACAGA
GAGATAAGAAACATGAATATTGGTTTGCTGTGCCACAAGAAAGGACAGATCACTTGTATGCCTTCTTCAT
TCAGTGGAGTCCAGAAATATATGCAGAAGATACTGGCGAATATACCAGAGAACCTGGATTTATAGTAGTA
AAAAAGATTGAGGAGTCTGAAACAATTGAGGATTCTAGTAATCAAGCAGCAGCCAGAGAATGGGAGATTA
CTACAAGGGAAGACATAAATTCAAAGCAGGTTGCTACAGTGAAAGCAGACCTGGAGTCTGAATCTTTTCG
ACCAAACCTAAGTGATCCCAGTGAACTTTTACTGCCAGATCAAATTGAAAAGCTTACCAAGCATCTTCCA
CCAAGAACAATTGGCTATCCATGGACTCTTGTTTATGGTACTGGAAAACATGGCACAAGCTTGAAAACTC
TTTATCGAACAATGACAGGTTTAGACACCCCAGTGCTGATGGTGATTAAAGACAGTGATGGACAGGTTTT
TGGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGCTTTTATGGTACTGGAGAGACCTTTGTTTTT
ACATTCTGTCCGGAGTTTGAGGTCTTTAAGTGGACAGGAGATAATATGTTTTTTATCAAAGGAGACATGG
ATTCACTAGCTTTCGGTGGTGGAGGAGGAGAATTTGCGCTTTGGCTTGATGGAGATCTCTACCATGGAAG
AAGCCATTCTTGTAAAACGTTTGGGAATCGTACACTTTCTAAGAAGGAAGATTTCTTTATCCAAGATATT
GAAATCTGGGCTTTTGAATAA

Translation (846 aa):
MSVSNLSWLKKKSQSVDINAPGFNPLAGAGKQTPQASKPPAPKTPIIEEEQNNAANTQKHPSRRSELKRF
YTIDTGQKKTLDKKDGRRMSFQKPKGTIEYTVESRDSLNSIALKFDTTPNELVQLNKLFSRAVVTGQVLY
VPDPEYVSSVESSPSLSPVSPLSPTSSEAEFDKTTNPDVHPTEATPSSTFTGIRPARVVSSTSEEEEAFT
EKFLKINCKYITSGKGTVSGVLLVTPNNIMFDPHKNDPLVQENGCEEYGIMCPMEEVMSAAMYKEILDSK
IKESLPIDIDQLSGRDFCHSKKMTGSNTEEIDSRIRDAGNDSASTAPRSTEESLSEDVFTESELSPIREE
LVSSDELRQDKSSGASSESVQTVNQAEVESLTVKSESTGTPGHLRSDTEHSTNEVGTLCHKTDLNNLEMA
IKEDQIADNFQGISGPKEDSTSIKGNSDQDSFLHENSLHQEESQKENMPCGETAEFKQKQSVNKGKQGKE
QNQDSQTEAEELRKLWKTHTMQQTKQQRENIQQVSQKEAKHKITSADGHIESSALLKEKQRHRLHKFLCL
RVGKPMRKTFVSQASATMQQYAQRDKKHEYWFAVPQERTDHLYAFFIQWSPEIYAEDTGEYTREPGFIVV
KKIEESETIEDSSNQAAAREWEITTREDINSKQVATVKADLESESFRPNLSDPSELLLPDQIEKLTKHLP
PRTIGYPWTLVYGTGKHGTSLKTLYRTMTGLDTPVLMVIKDSDGQVFGALASEPLKVSDGFYGTGETFVF
TFCPEFEVFKWTGDNMFFIKGDMDSLAFGGGGGEFALWLDGDLYHGRSHSCKTFGNRTLSKKEDFFIQDI
EIWAFE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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