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Report for CCDS13261.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13261.1 Public Homo sapiens 20 RBM12 24 110 108 CCDS HistoryNCBI Gene:10137Re-query CCDS DB by CCDS ID:13261.1Re-query CCDS DB by GeneID:10137See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13261.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359646.1 ENSP00000352668.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000359646.1Link to Ensembl Protein Viewer:ENSP00000352668.1Re-query CCDS DB by Nucleotide ID:ENST00000359646Re-query CCDS DB by Protein ID:ENSP00000352668
Original member Current member EBI ENST00000374104.7 ENSP00000363217.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000374104.7Link to Ensembl Protein Viewer:ENSP00000363217.3Re-query CCDS DB by Nucleotide ID:ENST00000374104Re-query CCDS DB by Protein ID:ENSP00000363217
Original member Current member EBI ENST00000374114.8 ENSP00000363228.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000374114.8Link to Ensembl Protein Viewer:ENSP00000363228.3Re-query CCDS DB by Nucleotide ID:ENST00000374114Re-query CCDS DB by Protein ID:ENSP00000363228
Original member Current member NCBI NM_001198838.2 NP_001185767.1 Accepted alive Link to Nucleotide Sequence:NM_001198838.2Link to Protein Sequence:NP_001185767.1Re-query CCDS DB by Nucleotide ID:NM_001198838Re-query CCDS DB by Protein ID:NP_001185767Link to BLAST:NP_001185767.1
Original member Current member NCBI NM_001198840.2 NP_001185769.1 Accepted alive Link to Nucleotide Sequence:NM_001198840.2Link to Protein Sequence:NP_001185769.1Re-query CCDS DB by Nucleotide ID:NM_001198840Re-query CCDS DB by Protein ID:NP_001185769Link to BLAST:NP_001185769.1
Original member Current member NCBI NM_006047.6 NP_006038.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006047.6Link to Protein Sequence:NP_006038.2Re-query CCDS DB by Nucleotide ID:NM_006047Re-query CCDS DB by Protein ID:NP_006038Link to BLAST:NP_006038.2
Original member Current member NCBI NM_152838.4 NP_690051.1 Accepted alive Link to Nucleotide Sequence:NM_152838.4Link to Protein Sequence:NP_690051.1Re-query CCDS DB by Nucleotide ID:NM_152838Re-query CCDS DB by Protein ID:NP_690051Link to BLAST:NP_690051.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185767.1 932 Q9NTZ6 932 100% 0 0
NP_001185769.1 932 Q9NTZ6 932 100% 0 0
NP_006038.2 932 Q9NTZ6 932 100% 0 0
NP_690051.1 932 Q9NTZ6 932 100% 0 0

Chromosomal Locations for CCDS 13261.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 35652524 35655322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2799 nt):
ATGGCTGTGGTCATCCGTTTGCAAGGTCTCCCAATTGTGGCGGGGACCATGGACATTCGCCACTTCTTCT
CTGGATTGACCATTCCTGATGGGGGCGTGCATATTGTAGGGGGTGAACTGGGTGAGGCTTTCATCGTTTT
TGCCACTGATGAAGATGCAAGGCTTGGTATGATGCGCACAGGTGGTACAATTAAAGGGTCAAAAGTAACA
CTATTGTTGAGTAGTAAGACGGAAATGCAGAATATGATTGAACTGAGTCGTAGGCGTTTTGAAACTGCCA
ACTTAGATATACCACCAGCAAATGCCAGTAGATCAGGACCACCACCTAGCTCAGGAATGAGTAGCAGGGT
AAACTTGCCCACAACAGTATCCAACTTTAATAATCCATCACCCAGTGTAGTTACTGCCACCACTTCTGTT
CATGAAAGCAACAAAAACATACAGACATTTTCCACAGCCAGCGTAGGAACAGCTCCTCCAAATATGGGGG
CTTCCTTTGGGAGCCCAACGTTTAGCTCAACTGTTCCAAGCACAGCCTCTCCAATGAACACAGTCCCGCC
GCCACCAATTCCTCCAATTCCAGCGATGCCATCTCTGCCACCAATGCCATCCATTCCCCCAATTCCAGTT
CCTCCTCCAGTACCTACATTGCCTCCTGTGCCTCCTGTGCCCCCGATTCCCCCAGTTCCTTCTGTGCCAC
CCATGACCCCACTGCCACCCATGTCGGGCATGCCGCCCTTGAATCCGCCACCTGTGGCACCTCTACCTGC
TGGAATGAATGGCTCTGGAGCACCTATGAATTTGAACAATAATCTGAATCCTATGTTTCTTGGTCCGTTG
AATCCTGTTAACCCTATCCAGATGAACTCTCAGAGCAGTGTGAAGCCACTCCCCATCAACCCTGATGATC
TGTATGTCAGTGTGCATGGAATGCCCTTTTCTGCAATGGAAAATGATGTCAGAGATTTTTTTCATGGGCT
CCGTGTTGATGCAGTGCATTTGTTGAAAGATCATGTAGGTCGAAATAATGGGAATGGATTGGTTAAGTTT
CTCTCCCCTCAAGATACATTTGAAGCTTTGAAACGAAACAGAATGCTGATGATTCAACGCTATGTGGAAG
TTAGCCCTGCCACAGAAAGACAGTGGGTAGCTGCTGGAGGCCATATCACTTTTAAGCAAAATATGGGACC
TTCTGGACAAACTCATCCCCCTCCTCAGACACTTCCCAGGTCAAAATCGCCCAGTGGGCAGAAAAGATCA
AGGTCAAGATCACCACATGAGGCTGGTTTTTGTGTTTACTTGAAAGGGCTACCATTTGAAGCAGAAAACA
AACATGTCATTGATTTTTTTAAAAAGCTGGATATTGTGGAAGATAGTATTTATATAGCTTATGGACCCAA
TGGGAAAGCAACTGGCGAAGGCTTTGTAGAGTTCAGAAATGAGGCTGACTATAAGGCTGCTCTGTGTCGT
CATAAACAGTACATGGGCAATCGCTTTATTCAAGTTCATCCAATTACTAAGAAAGGTATGCTAGAAAAGA
TAGATATGATTCGAAAAAGACTGCAGAACTTCAGCTATGACCAGAGGGAAATGATACTAAATCCAGAGGG
GGATGTCAACTCTGCCAAAGTCTGTGCCCACATAACAAATATTCCATTCAGCATTACAAAGATGGATGTT
CTTCAGTTCCTAGAAGGAATCCCAGTGGATGAAAATGCTGTACATGTTCTTGTTGATAACAATGGGCAAG
GTCTAGGACAGGCATTGGTTCAGTTTAAAAATGAAGATGATGCACGTAAGTCTGAACGCTTACACCGTAA
AAAACTTAATGGGAGAGAAGCTTTTGTTCATGTAGTTACCCTAGAAGATATGAGAGAGATTGAGAAAAAT
CCCCCTGCCCAAGGAAAAAAGGGATTAAAGATGCCTGTGCCAGGTAATCCTGCAGTTCCAGGAATGCCCA
ATGCGGGACTGCCCGGTGTGGGACTGCCCAGTGCAGGACTTCCCGGTGCAGGCCTGCCCAGCACAGGACT
GCCTGGTTCAGCAATAACCAGTGCAGGACTGCCTGGTGCGGGAATGCCCAGTGCAGGAATACCTAGTGCA
GGAGGTGAAGAGCATGCCTTCCTGACTGTAGGATCAAAGGAAGCCAATAATGGGCCTCCATTTAACTTTC
CTGGTAATTTTGGTGGATCAAATGCCTTTGGGCCACCAATCCCTCCTCCAGGATTAGGAGGCGGGGCCTT
TGGTGATGCTAGGCCTGGTATGCCTTCAGTTGGAAACAGTGGTTTGCCTGGTCTAGGACTGGATGTTCCG
GGTTTTGGAGGTGGACCAAACAATTTAAGTGGGCCATCGGGATTTGGAGGGGGCCCTCAGAATTTTGGAA
ATGGCCCTGGTAGCTTAGGCGGTCCCCCGGGGTTTGGAAGTGGCCCTCCTGGTCTTGGAAGTGCCCCTGG
GCATTTGGGTGGGCCACCAGCTTTTGGGCCTGGCCCCGGCCCCGGCCCCGGCCCTGGCCCAATCCATATT
GGTGGTCCCCCTGGCTTTGCATCTAGTTCTGGAAAACCAGGACCGACAGTAATTAAAGTGCAAAACATGC
CCTTTACTGTGTCTATTGATGAGATTTTAGATTTCTTTTATGGCTATCAAGTAATCCCAGGCTCAGTGTG
TTTAAAATACAATGAAAAAGGTATGCCCACAGGTGAAGCCATGGTGGCCTTTGAGTCTCGGGATGAAGCC
ACAGCTGCTGTCATTGACTTAAATGACAGGCCTATAGGTTCAAGAAAAGTAAAACTTGTATTAGGGTAG

Translation (932 aa):
MAVVIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGELGEAFIVFATDEDARLGMMRTGGTIKGSKVT
LLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPSSGMSSRVNLPTTVSNFNNPSPSVVTATTSV
HESNKNIQTFSTASVGTAPPNMGASFGSPTFSSTVPSTASPMNTVPPPPIPPIPAMPSLPPMPSIPPIPV
PPPVPTLPPVPPVPPIPPVPSVPPMTPLPPMSGMPPLNPPPVAPLPAGMNGSGAPMNLNNNLNPMFLGPL
NPVNPIQMNSQSSVKPLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKF
LSPQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKRS
RSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCR
HKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREMILNPEGDVNSAKVCAHITNIPFSITKMDV
LQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLEDMREIEKN
PPAQGKKGLKMPVPGNPAVPGMPNAGLPGVGLPSAGLPGAGLPSTGLPGSAITSAGLPGAGMPSAGIPSA
GGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPPIPPPGLGGGAFGDARPGMPSVGNSGLPGLGLDVP
GFGGGPNNLSGPSGFGGGPQNFGNGPGSLGGPPGFGSGPPGLGSAPGHLGGPPAFGPGPGPGPGPGPIHI
GGPPGFASSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEA
TAAVIDLNDRPIGSRKVKLVLG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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