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Report for CCDS4646.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4646.1 Public Homo sapiens 6 ZSCAN9 24 110 108 CCDS HistoryNCBI Gene:7746Re-query CCDS DB by CCDS ID:4646.1Re-query CCDS DB by GeneID:7746See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4646.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000252207.10 ENSP00000252207.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000252207.10Link to Ensembl Protein Viewer:ENSP00000252207.5Re-query CCDS DB by Nucleotide ID:ENST00000252207Re-query CCDS DB by Protein ID:ENSP00000252207
Original member Current member EBI ENST00000531979.5 ENSP00000433402.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000531979.5Link to Ensembl Protein Viewer:ENSP00000433402.1Re-query CCDS DB by Nucleotide ID:ENST00000531979Re-query CCDS DB by Protein ID:ENSP00000433402
Original member Current member NCBI NM_001199480.2 NP_001186409.1 Accepted alive Link to Nucleotide Sequence:NM_001199480.2Link to Protein Sequence:NP_001186409.1Re-query CCDS DB by Nucleotide ID:NM_001199480Re-query CCDS DB by Protein ID:NP_001186409Link to BLAST:NP_001186409.1
Original member Current member NCBI NM_006299.5 NP_006290.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006299.5Link to Protein Sequence:NP_006290.1Re-query CCDS DB by Nucleotide ID:NM_006299Re-query CCDS DB by Protein ID:NP_006290Link to BLAST:NP_006290.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186409.1 394 O15535-1 394 100% 0 0
NP_006290.1 394 O15535-1 394 100% 0 0

Chromosomal Locations for CCDS 4646.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 28227085 28227504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28227690 28227837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28232562 28233178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1185 nt):
ATGAATACAAACTCAAAGGAGGTTTTATCCCTGGGTGTTCAAGTTCCCGAGGCATGGGAAGAACTTCTGA
CAATGAAAGTGGAAGCAAAAAGTCACCTTCAATGGCAGGAATCCAGACTGAAACGCAGTAATCCACTGGC
AAGGGAAATCTTCCGAAGGCACTTTCGACAGCTGTGCTACCAAGAGACCCCTGGACCAAGGGAGGCTCTT
ACTCGACTCCAGGAACTTTGCTACCAGTGGTTGAGGCCACATGTGAGCACAAAGGAGCAGATTTTGGATC
TGCTGGTGCTGGAGCAGTTTCTATCCATTCTGCCCAAGGAGCTCCAGGGCTGGGTGAGGGAACACTGTCC
AGAGAGTGGAGAAGAGGCTGTGATTTTGCTGGAGGATCTGGAGAGAGAGCTCGATGAACCACAACATGAG
ATGGTGGCCCACAGACACAGACAAGAAGTCCTCTGTAAAGAGATGGTGCCTCTAGCAGAGCAGACACCAC
TGACCCTTCAGTCCCAGCCTAAGGAGCCACAGCTCACATGTGACTCTGCTCAGAAGTGCCATTCTATTGG
AGAGACAGATGAAGTAACCAAGACTGAGGACAGAGAGTTGGTGCTAAGGAAAGACTGTCCTAAGATAGTG
GAACCACATGGGAAAATGTTTAATGAGCAGACCTGGGAGGTATCACAGCAGGATCCCTCACATGGAGAAG
TTGGTGAACATAAGGATAGGATAGAGAGGCAGTGGGGAAACCTCTTAGGAGAGGGGCAACACAAATGTGA
TGAATGTGGGAAGAGCTTTACTCAGAGCTCAGGTCTCATTCGACATCAAAGAATTCATACTGGAGAAAGA
CCTTATGAATGTAATGAATGTGGGAAAGCCTTCAGTCGAAGTTCTGGTCTTTTTAATCACCGAGGAATCC
ACAATATACAGAAACGGTACCACTGCAAGGAGTGTGGGAAGGTCTTCAGTCAGAGTGCGGGTCTTATCCA
GCATCAGAGAATCCACAAAGGAGAAAAGCCGTATCAGTGCAGCCAGTGCAGTAAGAGCTACAGTCGGCGT
TCATTTCTCATTGAACATCAGAGAAGCCACACAGGGGAGCGACCTCACCAGTGCATTGAATGTGGGAAAA
GCTTTAATCGACACTGCAACCTCATTCGCCATCAGAAGATCCACACAGTGGCTGAGCTGGTCTAG

Translation (394 aa):
MNTNSKEVLSLGVQVPEAWEELLTMKVEAKSHLQWQESRLKRSNPLAREIFRRHFRQLCYQETPGPREAL
TRLQELCYQWLRPHVSTKEQILDLLVLEQFLSILPKELQGWVREHCPESGEEAVILLEDLERELDEPQHE
MVAHRHRQEVLCKEMVPLAEQTPLTLQSQPKEPQLTCDSAQKCHSIGETDEVTKTEDRELVLRKDCPKIV
EPHGKMFNEQTWEVSQQDPSHGEVGEHKDRIERQWGNLLGEGQHKCDECGKSFTQSSGLIRHQRIHTGER
PYECNECGKAFSRSSGLFNHRGIHNIQKRYHCKECGKVFSQSAGLIQHQRIHKGEKPYQCSQCSKSYSRR
SFLIEHQRSHTGERPHQCIECGKSFNRHCNLIRHQKIHTVAELV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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