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Report for CCDS38933.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38933.1 Public Mus musculus 4 Emc1 23 108 98 CCDS HistoryNCBI Gene:230866Re-query CCDS DB by CCDS ID:38933.1Re-query CCDS DB by GeneID:230866See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38933.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000179784.8 ENSMUSP00000137103.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179784.8Link to Ensembl Protein Viewer:ENSMUSP00000137103.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179784Re-query CCDS DB by Protein ID:ENSMUSP00000137103
Original member Current member NCBI NM_146157.4 NP_666269.2 Accepted alive Link to Nucleotide Sequence:NM_146157.4Link to Protein Sequence:NP_666269.2Re-query CCDS DB by Nucleotide ID:NM_146157Re-query CCDS DB by Protein ID:NP_666269Link to BLAST:NP_666269.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666269.2 997 Q8C7X2-1 997 100% 0 0

Chromosomal Locations for CCDS 38933.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 139352620 139352717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139354161 139354285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139354812 139354877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139355092 139355185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139357503 139357631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139359240 139359366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139360030 139360179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139360457 139360624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139360880 139360951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139361262 139361324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139362096 139362218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139363166 139363262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139363657 139363779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139364331 139364339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139365195 139365394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139365518 139365667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139366375 139366536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139367094 139367213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139369875 139370012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139370924 139371097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139371596 139371806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139373809 139373893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139375080 139375209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139375346 139375525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2994 nt):
ATGGCGGTCGCGGTGGCGTCTGGGTTCTGGATCTGGGCTGCTGTGCTGCTCGTCCCTGCGGCCGCGGTCT
ACGAAGACCAAGTGGGCAAGTTTGACTGGAGACAGCAGTATGTTGGGAAGATCAAGTTTGCCTCCTTGGA
GTTTTCCCCTGGATCCAAGAAGTTGGTTGTGGCCACAGAGAAGAATGTGATTGCGGCGTTAAATTCTCGG
ACTGGAGAGATCTTGTGGCGCCATGTTGACAAAGGCACAGCAGAAGGAGCTGTGGATGCCATGCTGGTCC
ATGGACAAGATGCAATCACTGTATCCAACGGAGGGCGCCTCATGCGTTCCTGGGAGACCAACATCGGGGG
CCTGAACTGGGAGATAACTCTGGACACTGGCAGTTTCCAGGCACTTGGGCTAGTGGGCCTTCAGGAGTCA
GTGAGGTACATTGCAGTTCTGAAGAAGACGACCCTCACCCTCCACCACCTCTCCAGTGGGCACCTGAAGT
GGGTGGAGCATCTGCCAGAAAGTGACAGCATCCTCTACCAGATGGTGTATTCCTACGGCTCCGGGGTGGT
GTGGGCCCTTGGCATCGTTCCCTTCAGCCACGTGAACATCGTCAAGTTTAACGTGGAGGATGGAGAGATT
GTTCAGCAGGTCAGGGTTTGGACTCCATGGCTGCAGCACCTCACTGGGGCCTGTGGTGTGGTAGATGAGG
CTGTCCTGGTATGCCCCGACCCCAGCTCACACTCACTCCACACTTTGGCCCTGGAGACGGAGTGGGAACT
GCGACAGATCCCCCTGCAGTCTCCTGACTTAGAATTTGGAAGTGGATTCCAGCCCCAAGTGCTGCCCACA
CAACCCAGCCCAGTGGCTCCTTCTCGAGCCCAGTTCTTCCTGCAGTTGTCCCCAAGCCACTACGCTCTAC
TGCACTACCACCATGGTGCCGTGACTCTGCTTAAGAACTTCCCCCAGGCCACGCTCGTCAGCTTCGCCAC
CACAGGGGAGAAGACAGTGGCTGCAGTCATGACCTGTCGCACTGAAGTGCAAAAACCTGTCAGTGCTGGA
GATGGGTCTGTGGCAAGCTTTCCTGAGACATCTGGTGCACAGGACTCTCTGGCTTGCTTCAACCAGACCT
ACACCATTAACCTGTACTTAGTGGAGACAGGTCGGCGGCTCCTAGACACTTCCATTTCCTTCAGCCTGGA
GCAGAAGGGCACGCGACCTGAGCAGCTGTACATCCAGGTGTTCTTGAAGAAGGACGACTCGGTGGGCTAC
CGGGCCTTGGTGCAGACACAGGACCATCTGCAGCTGTTCCTGCAGCAGCTTGCTGGGAAGGTGGTGTTGT
GGAGCCGAGAGGAGTCCCTGGCAGAAGTCGTGTGCCTGGAGATGGTGGATCTCCCCCTGACTGGAGCGCA
GGCTGAGTTGGAAGGAGAATTTGGCAAGAAGGCAGCGATTCAAGATGGCTTGCTGGGGATGTTCCTGAAA
CGCCTGTCGTCCCAGCTCATCCTGCTCCAGGCCTGGACTTCCCACCTCTGGAAAATGTTCTACGATGCTC
GGAAGCCCCGAAGCCAGATTAAGAATGAGATCAACATCGACACACTGGCTAGAGATGAGTTCAACCTGCA
GAAAATGATGGTGACGGTAACAGCCTCAGGCAAGCTCTTTGGCATCGAGAGCAGCTCTGGAACCATTCTG
TGGAAGCAGTATCTGCCCAATGTTAAGCCAGACTCCTCCTTTAAGCTGATGGTGCAGAGGACTACTGCCC
ATTTCCCCCATCCACCCCAGTGCACGCTGCTGGTGAAGGACAAGGAGACAGGAATGAGCTCTCTGTTTGT
CTTCAACCCCATTTTTGGCAAGTGGAGCCAGGTAGCTCCCCCAGTGCTGAAGCGCCCCATCTTGCAGTCA
CTGCTTCTCCCAGTCATGGATCAAGACTATGCCAAGGTGTTGCTGTTGGTGGATGACGAATACAAGGTCA
CAGCTTTCCCAGCTACGCGGAATGTCTTGCGGCAGCTGCATGAACTTGCCCCCTCCATCTTCTTCTACTT
GGTGGATGCAGAGCAGGGGCGGCTCAGTGGGTATCAGCTTCGAAAGGATCTCACTACAGAACTGAGTTGG
GAGCTGACCATCCCCCCAGAAGTGCAGCGCGTCGTCAAGGTCAAGGGGAAGCGCAGCAGCGAGCACGTAC
ACTCCCAGGGCCGGGTGATGGGGGATCGAAGTGTGCTCTACAAGAGTCTGAACCCCAACTTGCTGGCCGT
GGTGACAGAGAGCACGGATGTCCACCACGAGCGCACCTTTATTGGCATCTTCCTCATTGATGGTGTCACT
GGCCGCATCATCCACTCCTCCGTGCAGAAGAAGGCCAGGGGCCCTGTCCACCTTGTGCATTCAGAGAACT
GGGTGGTGTACCAGTACTGGAATTCTAAGGCTCGGCGCAATGAGCTGACGGCCCTGGAGCTCTACGAGGG
CACTGAACAGTACAATGCCACTGCCTTCAGCTCTCTAGACCGACCCCAGCTGCCCCAGGTCCTCCAGCAG
TCCTACATCTTCCCCTCCTCCATCAGTGCCATGGAAGCTACCATCACCGAGAGGGGCATCACCAGCCGGC
ACTTGCTCATTGGGCTGCCTTCTGGAGCAATCCTTTCCCTCCCCAAGGCCTTGCTGGATCCCCGGCGCCC
AGAGATCCCAACAGAGCAAAGCAGAGAAGAGAACCTGATCCCATATTCTCCAGATGTTCAGGTCCATGCA
GAGCGATTCATCAACTATAACCAGACAGTCTCTCGAATGCGAGGCATCTATACAGCGCCCTCAGGCCTGG
AGTCCACTTGTTTGGTTGTGGCCTACGGTTTGGATATTTACCAAACTCGAGTTTACCCGTCCAAGCAGTT
TGATGTCCTGAAAGATGACTACGACTATGTGCTCATCAGCAGTGTCCTTTTTGGCCTGGTTTTTGCCACC
ATGATCACAAAGAGGCTGGCACAGGTGAAACTCCTCAATCGAGCCTGGCGGTAA

Translation (997 aa):
MAVAVASGFWIWAAVLLVPAAAVYEDQVGKFDWRQQYVGKIKFASLEFSPGSKKLVVATEKNVIAALNSR
TGEILWRHVDKGTAEGAVDAMLVHGQDAITVSNGGRLMRSWETNIGGLNWEITLDTGSFQALGLVGLQES
VRYIAVLKKTTLTLHHLSSGHLKWVEHLPESDSILYQMVYSYGSGVVWALGIVPFSHVNIVKFNVEDGEI
VQQVRVWTPWLQHLTGACGVVDEAVLVCPDPSSHSLHTLALETEWELRQIPLQSPDLEFGSGFQPQVLPT
QPSPVAPSRAQFFLQLSPSHYALLHYHHGAVTLLKNFPQATLVSFATTGEKTVAAVMTCRTEVQKPVSAG
DGSVASFPETSGAQDSLACFNQTYTINLYLVETGRRLLDTSISFSLEQKGTRPEQLYIQVFLKKDDSVGY
RALVQTQDHLQLFLQQLAGKVVLWSREESLAEVVCLEMVDLPLTGAQAELEGEFGKKAAIQDGLLGMFLK
RLSSQLILLQAWTSHLWKMFYDARKPRSQIKNEINIDTLARDEFNLQKMMVTVTASGKLFGIESSSGTIL
WKQYLPNVKPDSSFKLMVQRTTAHFPHPPQCTLLVKDKETGMSSLFVFNPIFGKWSQVAPPVLKRPILQS
LLLPVMDQDYAKVLLLVDDEYKVTAFPATRNVLRQLHELAPSIFFYLVDAEQGRLSGYQLRKDLTTELSW
ELTIPPEVQRVVKVKGKRSSEHVHSQGRVMGDRSVLYKSLNPNLLAVVTESTDVHHERTFIGIFLIDGVT
GRIIHSSVQKKARGPVHLVHSENWVVYQYWNSKARRNELTALELYEGTEQYNATAFSSLDRPQLPQVLQQ
SYIFPSSISAMEATITERGITSRHLLIGLPSGAILSLPKALLDPRRPEIPTEQSREENLIPYSPDVQVHA
ERFINYNQTVSRMRGIYTAPSGLESTCLVVAYGLDIYQTRVYPSKQFDVLKDDYDYVLISSVLFGLVFAT
MITKRLAQVKLLNRAWR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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