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Report for CCDS3457.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3457.1 Public Homo sapiens 4 N4BP2 24 110 108 CCDS HistoryNCBI Gene:55728Re-query CCDS DB by CCDS ID:3457.1Re-query CCDS DB by GeneID:55728See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3457.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261435.11 ENSP00000261435.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000261435.11Link to Ensembl Protein Viewer:ENSP00000261435.6Re-query CCDS DB by Nucleotide ID:ENST00000261435Re-query CCDS DB by Protein ID:ENSP00000261435
Original member Current member NCBI NM_018177.6 NP_060647.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018177.6Link to Protein Sequence:NP_060647.2Re-query CCDS DB by Nucleotide ID:NM_018177Re-query CCDS DB by Protein ID:NP_060647Link to BLAST:NP_060647.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060647.2 1770 Q86UW6-1 1770 100% 0 0

Chromosomal Locations for CCDS 3457.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 40097341 40097569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40102075 40103218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40106900 40107024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40112084 40112172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40113432 40113508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40117869 40118024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40119932 40122309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40123127 40123212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40124160 40124205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40126134 40126330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40131801 40131919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40136944 40137082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40142673 40142861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40144632 40144800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40152780 40152903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40154192 40154237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5313 nt):
ATGCCAAGGAGAAGGAAAAATCTTGGGGGAAATCCTTTTCGGAAGACTGCAAACCCTAAGGAAGTTGTCG
TATCCAGTGTTGCTAGTCGTGAGGAGCCAACCACTACTCTACCTTCCATGGGTGAGACAAAAGTTGATCA
GGAAGAACTCTTCACCAGTATCTCAGAGATATTTTCTGATCTGGATCCTGATGTAGTGTATTTGATGCTT
TCTGAATGTGATTTCAAAGTTGAAAATGCTATGGATTGTCTATTAGAATTATCTGCCACTGATACCAAGA
TAGAAGAATCATCTTCACAAAGTTTCGTTGCTTCTGAGAACCAAGTAGGTGCAGCAGAAAGTAAAATAAT
GGAAAAACGTCCTGAAGAAGAGAGTGAAGATTCAAAAATGGATTCATTTTTGGACATGCAGCTAACTGAA
GACCTGGATTCCTTAATACAGAATGCTTTTGAGAAATTGAACTCTTCTCCTGATGACCAAGTATACTCAT
TTTTGCCTTCACAAGATGTTAATAGTTTTAATGACTCAAGTGAGTTTATAAATCCTGATTCAAGTAATAT
GACTCCCATTTTTTCTACACAAAATATGAATTTGAACGGTGAAAATTTAGAGAATTCTGGTTCTACTTTA
AGTTTAAACCCATTACCTTCACATTCAGTTTTGAACGAGTCCAAGTGTTTTATAAAGGATAACACATTGG
CTTTGGAAAGTAACTACCCGGAAGATTCTCTTCTCAGTAGTTCTTTAAATGTAGCAAGTGACTCCATCGC
AGGTTGTAGCAGTCTCAATCAAAAACAGAAAGAACTTTTAGAATCTGAGTGCGTTGAGGCTCAATTCTCT
GAAGCTCCTGTAGATTTGGATGCCAGTGAACCTCAGGCTTGTTTAAACCTTCCAGGGCTTGATTTACCAG
GTACAGGTGGGGATCAGAAATCTACTCGGGTCTCTGATGTGTTTCTACCTTCCGAAGGGTTCAACTTCAA
GCCACACAAACATCCTGAACTGCCAACTAAGGGGAAGGATGTGAGTTACTGCCCGGTACTTGCTCCTCTC
CCATTGCTGTTGCCTCCTCCGCCACCTCCACCGATGTGGAATCCAATGATTCCTGCTTTTGACCTCTTCC
AAGGAAACCATGGCTTTGTAGCTCCTGTTGTAACCACAGCTGCACACTGGAGATCTGTCAACTACACATT
TCCACCCTCAGTTATTTCTCACACTTCCCCAACAAAAGTATGGAGAAATAAAGATGGAACAAGTGCTTAT
CAAGTACAAGAAACCCCAGTTTCTCAGGTTGTAAGAAAGAAGACATCTTACGTTGGACTAGTTCTTGTTC
TTCTCAGAGGTCTTCCGGGATCTGGAAAATCTTTTTTGGCAAGGACTTTGCAAGAGGATAATCCAAGTGG
AGTCATTCTTAGTACTGATGATTATTTTTATATAAATGGACAGTACCAGTTTGATGTAAAGTACTTAGGA
GAAGCACATGAATGGAACCAGAATCGTGCAAAAGAAGCATTTGAGAAGAAGATATCTCCTATAATTATAG
ATAATACAAACCTACAGGCATGGGAAATGAAACCATATGTTGCTTTGTCTCAGAAACACAAATATAAAGT
CCTTTTTCGGGAACCAGACACATGGTGGAAGTTTAAACCAAAGGAACTTGCAAGGCGTAACATTCATGGG
GTAAGCAAAGAAAAAATAACAAGAATGTTGGAACATTATCAACGTTTTGTTTCAGTGCCAATAATTATGA
GTTCTTCGGTTCCAGAGAAAATTGAACGTATTGAGTTGTGTGCATATTCTTGTGAGGATAGAAGCACTAG
CCCAAGAGACGATGAAGATATTATCTCTGAAAAAGAAGAAAATATTTTATCTTTATCTTTGAAGCATCTA
GAGTTCACTGAAGAGAAGAATCTTGATGTAACCAAAGAAACAATGTTACCTGAGAATGTTGCATATCTCT
CTAATGCAGATTTAAACAAAAGAAGAAAAGAAATAAGTGATATGAATCCTAGCATTCAAAGTGCTTTAAT
TCTGGAAACTCCACACATGTATTTTTCTGACTCTGAAAGCAAACTACAGGCAACAGACAAAAGTGAAAAC
GAGCAAATAGAAATGGTGGCTGTAAAAGGGTATAGTAAAACTGACACAGATAGTTCTATGGAGAGAGTAT
CACCTAGTACTTGCTGTAGTGAAAATAATCAAGAAGACTGTGATCTTGCAAATAGTGGACCACTTCAAAA
TGAAAAATCCTCACCTGGTGAAATAGTGGAAGAAAGAGCAACAGTAACGAAAAAAGCCTTTGGGAAACAA
AAAAGCAAATCGACTTTGGAAAAGTTCCCAAGACATGAGCTATCAAATTTTGTTGGTGACTGGCCAGTTG
ATAAGACTATTGGTCAGAGGACAAAAAGGAACAGAAAAACTGAAAAAACTTCATCCGTACAAAGCGACAA
AAAGTATAATTACCCTCAGTCACACAAATTAGTTAACAGTGTATCTGTGAATACAGATTGTGTCCAGCAA
CGAGGATCTCCACATGAAAGTGTAGAGGATGGCAGAAAGTCACAGTGTGATGATGCTTCAGAGCCACTCA
ATAGCTATAAATATGATGCTTATAAAAATATTGACAAAAACTCATTCAACATTATGGGTGACTGGCCTTC
ATCTGATTCTTTAGCTCAGAGGGAACACAGATCAAGAATGCCAAAGACTGGTTTAAGTGAGCCCAACCTA
GAAATTGGAACAAATGACAAAATGAATGAAATATCCTTATCTACAGCACATGAGGCCTGTTGGGGCACAA
GCTCTCAAAAACTAAAGACATTGGGTAGCTCCAATCTAGGAAGTTCTGAAATGCTGCTCAGTGAAATGAC
CTGTGAGAGTCAGACTTGTCTAAGTAAAAAGAGTCATGGGCAACACACATCGTTGCCTCTTACTTTTACC
AATAGTGCACCAACTGTTTCTGGAGTAGTAGAACCACAAACGTTAGCTGAATGTCAAGAGCAAATGCCTA
AGAGAGACCCTGGAAAAGAAGTAGGCATGTGCACCCAGACTGAACCACAGGATTTTGCTCTTTTATGGAA
AATAGAAAAGAATAAAATTAGCATTTCAGATTCTATCAAAGTATTAACAGGAAGATTAGATGGATTTAAG
CCGAAAGTTTTCAATATTAACACAAAATCAGACGTTCAAGAAGCAATTCCATATAGAGTAATGTATGATA
AAAGCACGTTTGTTGAAGAAAGTGAGCTTACCAGTGCAGATGAATCTGAAAATCTTAACATTCTTTGTAA
ACTGTTTGGATCCTTTTCATTAGAAGCCCTGAAAGACTTATATGAGAGGTGCAATAAAGATATTATTTGG
GCCACAAGCCTTTTGTTGGATTCTGAAACTAAGTTATGTGAGGATACAGAGTTTGAGAATTTCCAAAAAT
CGTGTGATGGATCACAAATTGGGCCTTTTTCTCTGGGGTTGAATTTGAAAGAAATTATTAGCCAAAGAGG
AACTTTAGAGAATTCTAATTCTCCTGTGCCAGAGTTTAGCCATGGGATTGGTATTAGTAACGCTGACTCA
CAGTCTACTTGTGATGCAGAAAGAGGAAACTCAGAGCAGGCGGAAATGAGAGCTGTCACTCCTGAAAACC
ATGAATCGATGACAAGTATATTTCCCAGTGCTGCTGTGGGTCTAAAGAATAATAATGACATACTTCCTAA
CAGCCAGGAAGAACTTTTATATAGCAGTAAGCAGTCCTTTCCAGGTATTCTAAAAGCTACTACTCCTAAA
GATATGAGTGAAACAGAAAAAAACCTAGTAGTCACAGAGACTGGAGACAACATACATTCTCCTTCACATT
TCTCTGATATTTTTAACTTTGTATCTAGTACTTCAAATCTTGAATTAAATGAAGAAATTTATTTTACTGA
TTCTCTTGAAATAAAGAGAAATGAAAATTTTCCAAAGGATTATGTGAAATTTTCAGATGAAGAAGAATTT
ATGAATGAAGATGAGAAGGAAATGAAGGAAATTCTAATGGCAGGAAGTAGTTTATCAGCTGGAGTTAGTG
GGGAAGATAAAACCGAGATATTGAATCCCACTCCAGCGATGGCCAAATCTCTGACCATAGACTGTCTGGA
ATTGGCATTACCCCCTGAACTGGCTTTTCAACTTAATGAATTATTTGGTCCTGTTGGTATTGATTCAGGG
TCTCTAACAGTTGAAGATTGTGTGGTTCATATAGATCTGAATCTGGCGAAAGTGATTCATGAGAAATGGA
AAGAATCTGTAATGGAGCGACAAAGACAAGAAGAGGTGTCTTGTGGCAAGTTTATGCAAGATCCTTCCTT
GGTTGGACATACTGGGCTTGATAATCCTGAACAAAAATCATCTCAGAGAACAGGCAAAAAATTACTGAAG
ACTTTAACAGCATCTGAAATGCTACCTTTATTGGATCATTGGAATACTCAAACTAAAAAAGTATCACTCA
GAGAAATAATGTCAGAAGAAATTGCCTTACAGGAAAAACATAATTTGAAAAGGGAGACCCTTATGTTTGA
AAAAGATTGTGCCACTAAACTAAAGGAGAAGCAGCTCTTTAAGATATTTCCAGCCATTAACCAAAATTTT
CTGGTGGACATTTTCAAGGACCACAACTATTCATTAGAACACACAGTGCAATTTCTTAACTGTGTTCTTG
AAGGGGACCCTGTAAAAACAGTTGTAGCCCAAGAGTTTGTTCACCAAAATGAGAATGTCACATCTCATAC
TGGCCAGAAGTCTAAAGAGAAAAAGCCAAAGAAATTAAAAGAGACTGAAGAAACACCAAGTGAACTGTCT
TTCCAGGACTTTGAGTACCCAGACTATGATGACTACAGAGCAGAGGCTTTCCTTCACCAACAGAAGAGGA
TGGAGTGCTACAGCAAGGCCAAAGAAGCTTATCGGATAGGGAAAAAAAATGTCGCCACCTTTTATGCCCA
GCAGGGTACTCTTCATGAGCAGAAGATGAAAGAAGCCAATCACCTTGCTGCCATAGAGATCTTTGAGAAA
GTCAATGCTTCGCTGCTGCCACAGAATGTTTTAGACCTCCATGGGCTGCATGTGGATGAAGCTCTAGAAC
ATTTGATGAGAGTTTTAGAGAAGAAGACTGAAGAATTTAAGCAGAACGGTGGGAAGCCCTATTTGTCTGT
GATTACGGGGAGAGGAAACCACAGCCAGGGAGGAGTTGCTCGCATCAAACCAGCTGTCATTAAGTACCTC
ATAAGCCATAGCTTCAGGTTCTCTGAAATTAAACCAGGGTGCTTGAAAGTCATGCTAAAGTAA

Translation (1770 aa):
MPRRRKNLGGNPFRKTANPKEVVVSSVASREEPTTTLPSMGETKVDQEELFTSISEIFSDLDPDVVYLML
SECDFKVENAMDCLLELSATDTKIEESSSQSFVASENQVGAAESKIMEKRPEEESEDSKMDSFLDMQLTE
DLDSLIQNAFEKLNSSPDDQVYSFLPSQDVNSFNDSSEFINPDSSNMTPIFSTQNMNLNGENLENSGSTL
SLNPLPSHSVLNESKCFIKDNTLALESNYPEDSLLSSSLNVASDSIAGCSSLNQKQKELLESECVEAQFS
EAPVDLDASEPQACLNLPGLDLPGTGGDQKSTRVSDVFLPSEGFNFKPHKHPELPTKGKDVSYCPVLAPL
PLLLPPPPPPPMWNPMIPAFDLFQGNHGFVAPVVTTAAHWRSVNYTFPPSVISHTSPTKVWRNKDGTSAY
QVQETPVSQVVRKKTSYVGLVLVLLRGLPGSGKSFLARTLQEDNPSGVILSTDDYFYINGQYQFDVKYLG
EAHEWNQNRAKEAFEKKISPIIIDNTNLQAWEMKPYVALSQKHKYKVLFREPDTWWKFKPKELARRNIHG
VSKEKITRMLEHYQRFVSVPIIMSSSVPEKIERIELCAYSCEDRSTSPRDDEDIISEKEENILSLSLKHL
EFTEEKNLDVTKETMLPENVAYLSNADLNKRRKEISDMNPSIQSALILETPHMYFSDSESKLQATDKSEN
EQIEMVAVKGYSKTDTDSSMERVSPSTCCSENNQEDCDLANSGPLQNEKSSPGEIVEERATVTKKAFGKQ
KSKSTLEKFPRHELSNFVGDWPVDKTIGQRTKRNRKTEKTSSVQSDKKYNYPQSHKLVNSVSVNTDCVQQ
RGSPHESVEDGRKSQCDDASEPLNSYKYDAYKNIDKNSFNIMGDWPSSDSLAQREHRSRMPKTGLSEPNL
EIGTNDKMNEISLSTAHEACWGTSSQKLKTLGSSNLGSSEMLLSEMTCESQTCLSKKSHGQHTSLPLTFT
NSAPTVSGVVEPQTLAECQEQMPKRDPGKEVGMCTQTEPQDFALLWKIEKNKISISDSIKVLTGRLDGFK
PKVFNINTKSDVQEAIPYRVMYDKSTFVEESELTSADESENLNILCKLFGSFSLEALKDLYERCNKDIIW
ATSLLLDSETKLCEDTEFENFQKSCDGSQIGPFSLGLNLKEIISQRGTLENSNSPVPEFSHGIGISNADS
QSTCDAERGNSEQAEMRAVTPENHESMTSIFPSAAVGLKNNNDILPNSQEELLYSSKQSFPGILKATTPK
DMSETEKNLVVTETGDNIHSPSHFSDIFNFVSSTSNLELNEEIYFTDSLEIKRNENFPKDYVKFSDEEEF
MNEDEKEMKEILMAGSSLSAGVSGEDKTEILNPTPAMAKSLTIDCLELALPPELAFQLNELFGPVGIDSG
SLTVEDCVVHIDLNLAKVIHEKWKESVMERQRQEEVSCGKFMQDPSLVGHTGLDNPEQKSSQRTGKKLLK
TLTASEMLPLLDHWNTQTKKVSLREIMSEEIALQEKHNLKRETLMFEKDCATKLKEKQLFKIFPAINQNF
LVDIFKDHNYSLEHTVQFLNCVLEGDPVKTVVAQEFVHQNENVTSHTGQKSKEKKPKKLKETEETPSELS
FQDFEYPDYDDYRAEAFLHQQKRMECYSKAKEAYRIGKKNVATFYAQQGTLHEQKMKEANHLAAIEIFEK
VNASLLPQNVLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHSQGGVARIKPAVIKYL
ISHSFRFSEIKPGCLKVMLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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