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Report for CCDS25428.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25428.1 Public Mus musculus 11 Dnajc7 23 108 98 CCDS HistoryNCBI Gene:56354Re-query CCDS DB by CCDS ID:25428.1Re-query CCDS DB by GeneID:56354See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25428.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000014339.14 ENSMUSP00000014339.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000014339.14Link to Ensembl Protein Viewer:ENSMUSP00000014339.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000014339Re-query CCDS DB by Protein ID:ENSMUSP00000014339
Original member NCBI NM_019795.4 NP_062769.2 Updated not alive Link to Nucleotide Sequence:NM_019795.4Link to Protein Sequence:NP_062769.2Re-query CCDS DB by Nucleotide ID:NM_019795Re-query CCDS DB by Protein ID:NP_062769
Current member NCBI NM_019795.5 NP_062769.2 Accepted alive Link to Nucleotide Sequence:NM_019795.5Link to Protein Sequence:NP_062769.2Re-query CCDS DB by Nucleotide ID:NM_019795Re-query CCDS DB by Protein ID:NP_062769Link to BLAST:NP_062769.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062769.2 494 Q9QYI3 494 100% 0 0

Chromosomal Locations for CCDS 25428.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 100583099 100583136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100583594 100583656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100584211 100584363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100584552 100584698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100584982 100585055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100589898 100589989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100590887 100591051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100591412 100591565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100592855 100592973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100596166 100596240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100598615 100598728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100599185 100599309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100601728 100601816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100619528 100619604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1485 nt):
ATGGCGGCTACCGCGGAGTGCGATGTGGTAATGGCGGCGACCGAGCCTGAACTGCTGGAGGACGAAGACG
CCAAGAGGGAAGCAGAATCCTTCAAGGAACAAGGGAATGCATATTATGCTAAGAAGGACTACAACGAAGC
TTATAACTATTACACAAAAGCCATAGATATGTGTCCTAACAATGCCAGCTATTACGGTAATCGAGCGGCC
ACACTGATGATGCTTGGACGGTTCCGGGAAGCTCTTGGAGATGCGCAGCAGTCTGTGAGGTTGGATGACA
GTTTTGTCCGGGGACACCTCCGAGAAGGCAAGTGCCACCTCTCACTTGGGAATGCAATGGCGGCATGTCG
TAGTTTCCAAAGAGCCCTAGAACTGGATCATAAAAATGCCCAGGCACAGCAGGAGTTCAAGAACGCCAAT
GCCGTCATGGAGTATGAGAAAATAGCAGAAGTGGATTTTGAAAAGCGAGATTTCCGGAAGGTTGTTTTCT
GCATGGACCGTGCCCTAGAATTTGCCCCTGCCTGCCATCGATTCAAAATTCTCAAAGCAGAATGTTTAGC
AATGCTTGGTCGATACCCAGAAGCACAGTTTGTGGCCAGTGACATTTTACGAATGGATTCCACCAATGCT
GATGCTCTGTATGTCCGGGGTCTTTGCCTTTATTACGAAGATTGTATTGAGAAGGCAGTGCAGTTTTTTG
TACAGGCTCTCAGGATGGCTCCTGACCACGAGAAGGCTTGTGTCGCTTGTAGAAATGCCAAAGCCCTTAA
AGCCAAGAAGGAAGATGGGAATAAAGCCTTTAAGGAAGGAAATTACAAGCTAGCATATGAACTGTACACA
GAAGCCTTGGGGATAGATCCCAACAACATAAAAACAAATGCTAAACTCTACTGTAATCGGGGTACGGTTA
ATTCCAAGCTTAGGCAACTGGAAGATGCCATAGAAGACTGTACAAATGCGGTGAAGCTCGATGACACTTA
CATCAAAGCCTACCTGAGAAGAGCTCAGTGTTACATGGACACAGAGCAGTTTGAAGAAGCCGTGCGGGAC
TATGAAAAAGTGTATCAGACGGAGAAAACAAAAGAACACAAACAGCTCCTTAAGAATGCACAGCTGGAAC
TGAAGAAGAGCAAGAGGAAAGATTACTACAAGATCCTGGGAGTGGACAAGAATGCCTCTGAGGACGAGAT
CAAGAAAGCTTACCGGAAACGGGCCTTGATGCACCATCCAGATCGGCACAGTGGGGCCAGTGCCGAAGTT
CAGAAGGAGGAGGAGAAGAAGTTTAAGGAAGTGGGAGAGGCCTTTACCATCCTCTCTGATCCCAAGAAAA
AGACTCGTTATGACAGTGGACAGGACTTGGATGAGGAGGGCATGAATATGGGCGATTTTGATGCAAACAA
CATCTTCAAGGCATTCTTCGGTGGTCCTGGGGGCTTCAGCTTTGAAGCATCTGGCCCAGGGAATTTCTAC
TTTCAGTTTGGCTAA

Translation (494 aa):
MAATAECDVVMAATEPELLEDEDAKREAESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPNNASYYGNRAA
TLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQAQQEFKNAN
AVMEYEKIAEVDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQFVASDILRMDSTNA
DALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACVACRNAKALKAKKEDGNKAFKEGNYKLAYELYT
EALGIDPNNIKTNAKLYCNRGTVNSKLRQLEDAIEDCTNAVKLDDTYIKAYLRRAQCYMDTEQFEEAVRD
YEKVYQTEKTKEHKQLLKNAQLELKKSKRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEV
QKEEEKKFKEVGEAFTILSDPKKKTRYDSGQDLDEEGMNMGDFDANNIFKAFFGGPGGFSFEASGPGNFY
FQFG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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