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Report for CCDS24845.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24845.1 Public Mus musculus 11 Zkscan6 23 108 98 CCDS HistoryNCBI Gene:52712Re-query CCDS DB by CCDS ID:24845.1Re-query CCDS DB by GeneID:52712See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24845.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018491.7 ENSMUSP00000018491.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018491.7Link to Ensembl Protein Viewer:ENSMUSP00000018491.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000018491Re-query CCDS DB by Protein ID:ENSMUSP00000018491
Original member Current member EBI ENSMUST00000071465.8 ENSMUSP00000071406.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071465.8Link to Ensembl Protein Viewer:ENSMUSP00000071406.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000071465Re-query CCDS DB by Protein ID:ENSMUSP00000071406
Original member Current member NCBI NM_001302374.1 NP_001289303.1 Accepted alive Link to Nucleotide Sequence:NM_001302374.1Link to Protein Sequence:NP_001289303.1Re-query CCDS DB by Nucleotide ID:NM_001302374Re-query CCDS DB by Protein ID:NP_001289303Link to BLAST:NP_001289303.1
Original member Current member NCBI NM_026107.3 NP_080383.2 Accepted alive Link to Nucleotide Sequence:NM_026107.3Link to Protein Sequence:NP_080383.2Re-query CCDS DB by Nucleotide ID:NM_026107Re-query CCDS DB by Protein ID:NP_080383Link to BLAST:NP_080383.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001289303.1 556 Q810A1 556 100% 0 0
NP_080383.2 556 Q810A1 556 100% 0 0

Chromosomal Locations for CCDS 24845.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 65814465 65814851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65815918 65816125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65816489 65816580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65821930 65822014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65822825 65822938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65828042 65828826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1671 nt):
ATGCCTGTTGACTTGGGGCAGGCCCTGGGCCCGCTTCCTTTTCTGGCCAAGGCTGAGGATGCCACATTCT
CTGCATCAGATGCTACCCAGCAAAGAGAGCTTGCCAACCCTGAGACTGCTCGCCAGCTTTTCAGGCAGTT
TCGTTACCAGGTGCTATCGGGGCCCCAGGAGACCCTGAGACAACTCCGGAAGCTCTGTTTCCAGTGGCTG
CGGCCAGAGGTTCACACCAAAGAGCAGATCCTGGAGCTGCTCATGCTGGAGCAGTTTCTGACCATCCTCC
CCGGGGAGATCCAGATGTGGGTGAGGAAGCAGTGTCCAGGCAGTGGACAGGAGGCAGTGACGCTCGTGGA
AAGCTTGAAGGGAGAACCCCAGAAACTGTGGCACTGGATCAGCACCCAAGTTCTAGGACAAGAGATTCCA
TTCGAGAAGGAGAATTTGACACACTGCCCTGGGGACAAGTTGGAGCCTGCACTGGAGGTGGAGCCCTCAC
TGGAAGTGGCACCTCAGGACCTGCCCCTTCAGAATTCATCCTCAGCAACTGGGGAGCTACTGAGCCATGG
TGTGAAAGAGGAATCAGACATGGAGCCAGAATTAGCTCTGGCTGCTTCCCAGCTTCCTGCCAGACCTGAG
GAGAGGCCTGTTAGAGACCAAGAGTTGGGAACAGCAGTTCTCCCACCACTACAGGAGGAGCAGTGGAGAC
ACCTGGATTCTACTCAGAAGGAACAGTACTGGGATCTCATGCTGGAGACCTATGGGAAAATGGTCTCAGG
AGTAGCAGGCATTTCCAACTCCAAACCTGACTTGACTAACTTAGCAGAATATGGGGAAGAGCTGGTGGGC
CTGCACCTTCACGGCGCTGAGAAGATGGCAAGACTCCCCTGCAAAGAAGACAGACAAGAAAATGACAAAG
AGAACCTAAACTTGGAAAATCACAGGGACCAGGGATGTCTGGATGTTTTCTGTCAGGCATCAGGTGAGGC
TCCACCACAGACTGCCTTGAGTGATTTCTTCGGTGAGAGTGAGCCGCATCGCTTTGGAGGAGACAGTGTC
CCAGAGGCTCTGGAAAACCATCAGGGTGAGGGAACTGGGGCGCATCTCTTTCCTTATGAAAGGGGCTCTG
GGAAACAGCCAGGTCAGCACATACAGAGCTCGTCTTTGGGAGAACTGACTGCCTTGTGGCTAGAGGAGAA
GAGAGAGGCCTCTCAGAAGGGACAGGCCAGATCCCCCATGGCCCAGAAACTGCCCACTTGCAGAGAGTGT
GGGAAAACCTTCTATAGGAATTCACAGCTTGTTTTTCACCAAAGGACTCACACGGGAGAGACATACTTTC
ATTGCCACATTTGCAAAAAAGCCTTTCTACGAAGCTCAGACTTTGTGAAACATCAGAGAACTCACACAGG
AGAGAAGCCCTGTAAATGTGATTACTGTGGGAAAGGCTTCAGTGACTTCTCAGGCTTGCGCCACCACGAG
AAAATCCACACAGGAGAGAAACCCTATAAATGCCCCCTCTGTGAGAAAAGCTTTATTCAGAGGTCAAACT
TCAATAGACATCAAAGGGTTCATACGGGTGAGAAACCTTATAAATGTACCCACTGTGGCAAGCAGTTCAG
CTGGAGCTCCAGCCTTGACAAGCATCAGAGATCACACTTGGGGAAGATGCCCTGCCCATAG

Translation (556 aa):
MPVDLGQALGPLPFLAKAEDATFSASDATQQRELANPETARQLFRQFRYQVLSGPQETLRQLRKLCFQWL
RPEVHTKEQILELLMLEQFLTILPGEIQMWVRKQCPGSGQEAVTLVESLKGEPQKLWHWISTQVLGQEIP
FEKENLTHCPGDKLEPALEVEPSLEVAPQDLPLQNSSSATGELLSHGVKEESDMEPELALAASQLPARPE
ERPVRDQELGTAVLPPLQEEQWRHLDSTQKEQYWDLMLETYGKMVSGVAGISNSKPDLTNLAEYGEELVG
LHLHGAEKMARLPCKEDRQENDKENLNLENHRDQGCLDVFCQASGEAPPQTALSDFFGESEPHRFGGDSV
PEALENHQGEGTGAHLFPYERGSGKQPGQHIQSSSLGELTALWLEEKREASQKGQARSPMAQKLPTCREC
GKTFYRNSQLVFHQRTHTGETYFHCHICKKAFLRSSDFVKHQRTHTGEKPCKCDYCGKGFSDFSGLRHHE
KIHTGEKPYKCPLCEKSFIQRSNFNRHQRVHTGEKPYKCTHCGKQFSWSSSLDKHQRSHLGKMPCP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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