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Report for CCDS24208.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24208.1 Public Mus musculus 10 Msrb3 23 108 98 CCDS HistoryNCBI Gene:320183Re-query CCDS DB by CCDS ID:24208.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24208.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000092143.11 ENSMUSP00000089781.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000092143.11Link to Ensembl Protein Viewer:ENSMUSP00000089781.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000092143Re-query CCDS DB by Protein ID:ENSMUSP00000089781
Original member NCBI NM_177092.4 NP_796066.1 Updated not alive Link to Nucleotide Sequence:NM_177092.4Link to Protein Sequence:NP_796066.1Re-query CCDS DB by Nucleotide ID:NM_177092Re-query CCDS DB by Protein ID:NP_796066
Current member NCBI NM_177092.5 NP_796066.1 Accepted alive Link to Nucleotide Sequence:NM_177092.5Link to Protein Sequence:NP_796066.1Re-query CCDS DB by Nucleotide ID:NM_177092Re-query CCDS DB by Protein ID:NP_796066Link to BLAST:NP_796066.1

Chromosomal Locations for CCDS 24208.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 120784068 120784238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120791402 120791499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120825108 120825136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120849976 120850053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120851984 120852092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 120871035 120871110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (561 nt):
ATGTCTGCCTTCAACCTGCTGCACTTGGTGACGAAGAGCCAGCCCGTGGCCCCGAGAGCCTGCGGGCTCC
CCTCAGGGTCATGTAGGGATAAAAAGAACTGTAAGGTGGTCTTTTCCCAGCAGGAACTGAGGAAGCGGCT
GACACCCCTACAGTACCATGTCACTCAGGAGAAAGGAACTGAAAGTGCCTTTGAAGGAGAGTACACACAT
CACAAAGATCCTGGAATATATAAATGTGTTGTCTGTGGAACTCCGTTGTTCAAGTCAGAAACCAAATTTG
ACTCTGGTTCAGGCTGGCCTGCCTTCCATGATGTGATCAGTTCGGAGGCCATCGAGTTCACAGATGACTT
TTCCTACGGGATGCACAGGGTGGAAACCAGCTGTTCTCAGTGTGGTGCTCATCTCGGGCACATTTTTGAC
GATGGACCTCGTCCGACCGGCAAAAGATACTGCATCAACTCAGCATCCTTGTCCTTCACTCCTGCAGACA
GCAGTGAGGCAGAAGGAAGCGGCATCAAAGAGAGCGGCAGCCCAGCAGCAGCAGACAGAGCTGAGCTGTA
A

Translation (186 aa):
MSAFNLLHLVTKSQPVAPRACGLPSGSCRDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTESAFEGEYTH
HKDPGIYKCVVCGTPLFKSETKFDSGSGWPAFHDVISSEAIEFTDDFSYGMHRVETSCSQCGAHLGHIFD
DGPRPTGKRYCINSASLSFTPADSSEAEGSGIKESGSPAAADRAEL


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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