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Report for CCDS5407.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5407.1 Public Homo sapiens 7 HOXA6 24 110 108 CCDS HistoryNCBI Gene:3203Re-query CCDS DB by CCDS ID:5407.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5407.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000222728.3 ENSP00000222728.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000222728.3Link to Ensembl Protein Viewer:ENSP00000222728.3Re-query CCDS DB by Nucleotide ID:ENST00000222728Re-query CCDS DB by Protein ID:ENSP00000222728
Original member Current member NCBI NM_024014.4 NP_076919.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024014.4Link to Protein Sequence:NP_076919.1Re-query CCDS DB by Nucleotide ID:NM_024014Re-query CCDS DB by Protein ID:NP_076919Link to BLAST:NP_076919.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076919.1 233 P31267 233 100% 0 0

Chromosomal Locations for CCDS 5407.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 27145658 27145917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27147308 27147749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (702 nt):
ATGAGTTCCTATTTTGTGAATCCCACTTTCCCCGGGAGCCTTCCCAGCGGCCAGGACTCCTTCTTGGGCC
AGCTGCCCCTCTACCAGGCTGGCTATGACGCGCTGAGGCCCTTCCCGGCCTCGTACGGGGCGTCGAGTCT
CCCGGACAAGACGTACACCTCACCTTGTTTCTACCAACAGTCCAACTCGGTCCTGGCCTGCAACCGGGCG
TCCTACGAGTACGGGGCCTCGTGTTTCTATTCTGATAAGGACCTCAGTGGCGCCTCGCCCTCGGGCAGTG
GCAAGCAGAGGGGCCCCGGGGACTACCTGCACTTTTCTCCCGAGCAGCAGTACAAACCCGACAGCAGCAG
CGGGCAGGGCAAAGCACTCCATGACGAAGGCGCCGACCGGAAGTACACGAGCCCGGTTTACCCTTGGATG
CAGCGGATGAACTCCTGCGCGGGTGCTGTGTATGGGAGCCATGGGCGCCGAGGCCGCCAGACCTACACGC
GCTACCAGACACTGGAGCTGGAGAAGGAGTTCCACTTCAACCGCTACCTGACACGGCGCCGCCGCATCGA
GATCGCCAACGCGCTCTGCCTCACCGAGCGCCAGATCAAGATCTGGTTCCAGAACCGCCGCATGAAGTGG
AAAAAGGAAAACAAGCTCATCAATTCCACGCAGCCCAGCGGGGAGGACTCAGAGGCAAAGGCGGGCGAGT
AG

Translation (233 aa):
MSSYFVNPTFPGSLPSGQDSFLGQLPLYQAGYDALRPFPASYGASSLPDKTYTSPCFYQQSNSVLACNRA
SYEYGASCFYSDKDLSGASPSGSGKQRGPGDYLHFSPEQQYKPDSSSGQGKALHDEGADRKYTSPVYPWM
QRMNSCAGAVYGSHGRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKW
KKENKLINSTQPSGEDSEAKAGE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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