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Report for CCDS25211.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25211.1 Public Mus musculus 11 Ppm1e 23 108 98 CCDS HistoryNCBI Gene:320472Re-query CCDS DB by CCDS ID:25211.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25211.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055438.4 ENSMUSP00000061278.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055438.4Link to Ensembl Protein Viewer:ENSMUSP00000061278.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000055438Re-query CCDS DB by Protein ID:ENSMUSP00000061278
Original member Current member NCBI NM_177167.4 NP_796141.2 Accepted alive Link to Nucleotide Sequence:NM_177167.4Link to Protein Sequence:NP_796141.2Re-query CCDS DB by Nucleotide ID:NM_177167Re-query CCDS DB by Protein ID:NP_796141Link to BLAST:NP_796141.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796141.2 749 Q80TL0 749 100% 0 0

Chromosomal Locations for CCDS 25211.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 87230880 87231928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87237130 87237223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87237432 87237575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87240603 87240791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87244269 87244468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87248932 87249050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87358449 87358903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2250 nt):
ATGGCGGGCTGCATCCCTGAGGAGAAAACTTACCGGCGCTTCCTGGAGCTGTTCCTGGGCGAGTTCCGCG
GACCGTGCGGTGGCGGCGAGCCAGAGCCCGAACCCGAATCCGAGCCCGAGCCCGAGCCCGAAGCCGAGCT
AGTCGCGGCTGAGGCGGCCGAGGCTTCGGGGGAGGAACCGGGGGAGGACGCTGCGACGGTAGAGGCGACC
GAGGAGGGGGAGCAGGACCAAGACCCCGAGCCCGAAGACGAGGCGGTGGAGGAGGAGACGGCGACGGAGG
GCGAGGAGGAGGAAGAGGAGGAAGCGGCTGCCCCGGGGCACTCGGCCGTGCCGCCACCGCCGCAGCCCCA
GCTGCCACCGCTGCCCCCGCTCCCACGGCCGCTGTCGGAGCGCATCACCCGAGAGGAGGTGGAGGGCGAG
AGCCTGGACCTGTGCCTGCAGCAGCTCTACAAATATAACTGCCCTTCCTTTCTGGCTGCTGCTTTAGCCA
GAGCCACATCAGATGAAGTCCTCCAGAGTGACCTTTCTGCTCACTGTATCCCAAAGGAAACGGACGGCAC
AGAAGGGACTGTGGAAATTGAGACAGTGAAATTGGCCCGTTCTGTCTTCAGCAAACTACATGAGATCTGC
TGCAGTTGGGTGAAGGACTTCCCTCTGCGCAGGAGGCCTCAGATTTATTATGAGACGTCAATTCATGCCA
TCAAGAACATGCGAAGGAAAATGGAGGACAAACACGTCTGCATTCCTGACTTTAACATGCTCTTCAACCT
AGAGGACCAGGAGGAACAAGCATACTTTGCAGTGTTTGATGGCCATGGGGGAGTGGACGCTGCTATTTAT
GCCTCCGTTCACCTACACGTTAACTTAGTGCGCCAGGAGATGTTTCCCCATGATCCTGCTGAGGCTCTCT
GCCGGGCCTTCCGTGTCACAGATGAGCGGTTTGTGCAGAAGGCAGCCAGGGAGAGCTTACGGTGTGGGAC
CACAGGAGTAGTGACTTTTATCAGAGGCAACATGCTCCACGTGGCATGGGTGGGCGATTCCCAGGTCATG
CTGGTAAGAAAGGGGCAAGCTGTTGAACTAATGAAACCACACAAGCCAGACAGAGAGGATGAAAAGCAGC
GAATTGAGGCCCTTGGAGGCTGTGTGGTTTGGTTTGGCGCCTGGAGGGTGAATGGAAGCCTGTCCGTCTC
CAGAGCCATCGGAGATGCTGAGCACAAGCCGTATATCTGTGGAGACGCAGACTCGGCCTCCACTGTTTTG
GATGGGACTGAAGACTACCTCATTCTGGCCTGTGACGGCTTCTATGACACCGTGAACCCTGACGAGGCAG
TGAAGGTTGTGTCTGACCACTTGAAAGAGAATAACGGAGACAGCAGCATGGTTGCCCACAAATTAGTAGC
GTCGGCTCGTGATGCGGGGTCAAGTGATAACATCACTGTTATTGTGGTATTCCTGAGGGACATGAACAAG
GCTGTAAATGTTAGTGAGGAGTCAGAGTGGACAGAGAACTCTTTTCAAGGAGGGCAAGAAGATGGTGGGG
ATGATAAGGAGACTCATGGAGAGTGCAAGCGCCCTTGGCCACAGCACCAGTGCTCAGCACCCGCCGATCT
AGGCTATGAGGGGCGAGTGGATTCATTCACTGATAGAACTAGCCTCAGCCCAGGGCCCCAAATCAACGTG
CTGGAAGATCCAGACTACCTAGATCTCACACAAATAGAAGCAAGCAAACCTCACAGTACCCAATTTTTGC
CACCAGTTGAGATGATTGGTCCTGGTGCACCAAAGAAAGATCTTAATGAGCTAATAATGGAGGAGAGATC
AGTCAAGTCATCATTGCCTGAACGGAGTGGTGCTGGAGAGCCTCGGGTTTCTTTTAATTTGGGTTCAACA
GGGCAACAGATATGCAGAATGGAGAACTTGTCTCCTGTCAGTTCTGGGTTGGAAAATGAACAGTTCAAAT
CCCGGGGGAAGACAGCGTCTAGGTTGTATCATTTACGCCACCACTACTCCAAAAGGCAGCGTGGATTCAG
GTTTAATCCAAAGTTTTACTCGTTTCTGTCTGCTCGAGAGCCTTCTCACAAAATAGGCATTAGCCTCTCC
TCACTTACTCGAAGTGGGAAGAGAAACAAGATGTTAAGAAGTTCTTTGCCATGGAGGGAAAATAGTTGGG
AAGGATATAGTGGAAATGTGAAGATCAGAAAGCGTAATGATATTCCATGCCCAGACTTTCCCTGGAGCTA
TAAAATTTAA

Translation (749 aa):
MAGCIPEEKTYRRFLELFLGEFRGPCGGGEPEPEPESEPEPEPEAELVAAEAAEASGEEPGEDAATVEAT
EEGEQDQDPEPEDEAVEEETATEGEEEEEEEAAAPGHSAVPPPPQPQLPPLPPLPRPLSERITREEVEGE
SLDLCLQQLYKYNCPSFLAAALARATSDEVLQSDLSAHCIPKETDGTEGTVEIETVKLARSVFSKLHEIC
CSWVKDFPLRRRPQIYYETSIHAIKNMRRKMEDKHVCIPDFNMLFNLEDQEEQAYFAVFDGHGGVDAAIY
ASVHLHVNLVRQEMFPHDPAEALCRAFRVTDERFVQKAARESLRCGTTGVVTFIRGNMLHVAWVGDSQVM
LVRKGQAVELMKPHKPDREDEKQRIEALGGCVVWFGAWRVNGSLSVSRAIGDAEHKPYICGDADSASTVL
DGTEDYLILACDGFYDTVNPDEAVKVVSDHLKENNGDSSMVAHKLVASARDAGSSDNITVIVVFLRDMNK
AVNVSEESEWTENSFQGGQEDGGDDKETHGECKRPWPQHQCSAPADLGYEGRVDSFTDRTSLSPGPQINV
LEDPDYLDLTQIEASKPHSTQFLPPVEMIGPGAPKKDLNELIMEERSVKSSLPERSGAGEPRVSFNLGST
GQQICRMENLSPVSSGLENEQFKSRGKTASRLYHLRHHYSKRQRGFRFNPKFYSFLSAREPSHKIGISLS
SLTRSGKRNKMLRSSLPWRENSWEGYSGNVKIRKRNDIPCPDFPWSYKI


Links Key
 Links to:   History report
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  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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