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Report for CCDS11531.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11531.1 Public Homo sapiens 17 HOXB6 24 110 108 CCDS HistoryNCBI Gene:3216Re-query CCDS DB by CCDS ID:11531.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11531.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000225648.4 ENSP00000225648.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000225648.4Link to Ensembl Protein Viewer:ENSP00000225648.3Re-query CCDS DB by Nucleotide ID:ENST00000225648Re-query CCDS DB by Protein ID:ENSP00000225648
Original member Current member EBI ENST00000484302.3 ENSP00000420009.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000484302.3Link to Ensembl Protein Viewer:ENSP00000420009.2Re-query CCDS DB by Nucleotide ID:ENST00000484302Re-query CCDS DB by Protein ID:ENSP00000420009
Original member Current member NCBI NM_001369397.2 NP_001356326.1 Accepted alive Link to Nucleotide Sequence:NM_001369397.2Link to Protein Sequence:NP_001356326.1Re-query CCDS DB by Nucleotide ID:NM_001369397Re-query CCDS DB by Protein ID:NP_001356326Link to BLAST:NP_001356326.1
Original member Current member NCBI NM_018952.5 NP_061825.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018952.5Link to Protein Sequence:NP_061825.2Re-query CCDS DB by Nucleotide ID:NM_018952Re-query CCDS DB by Protein ID:NP_061825Link to BLAST:NP_061825.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001356326.1 224 P17509-1 224 100% 0 0
NP_061825.2 224 P17509-1 224 100% 0 0

Chromosomal Locations for CCDS 11531.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 48596413 48596672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48597736 48598150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (675 nt):
ATGAGTTCCTATTTCGTGAACTCCACCTTCCCCGTCACTCTGGCCAGCGGGCAGGAGTCCTTCCTGGGCC
AGCTACCGCTCTATTCGTCGGGCTATGCGGACCCGCTGAGACATTACCCCGCGCCCTACGGGCCAGGGCC
GGGCCAGGACAAGGGCTTTGCCACTTCCTCCTATTACCCGCCGGCGGGCGGTGGCTACGGCCGAGCGGCG
CCCTGCGACTACGGGCCGGCGCCGGCCTTCTACCGCGAGAAAGAGTCGGCCTGCGCACTCTCCGGCGCCG
ACGAGCAGCCCCCGTTCCACCCCGAGCCGCGGAAGTCGGACTGCGCGCAGGACAAGAGCGTGTTCGGCGA
GACAGAAGAGCAGAAGTGCTCCACTCCGGTCTACCCGTGGATGCAGCGGATGAATTCGTGCAACAGTTCC
TCCTTTGGGCCCAGCGGCCGGCGAGGCCGCCAGACATACACACGTTACCAGACGCTGGAGCTGGAGAAGG
AGTTTCACTACAATCGCTACCTGACGCGGCGGCGGCGCATCGAGATCGCGCACGCCCTGTGCCTGACGGA
GAGGCAGATCAAGATATGGTTCCAGAACCGACGCATGAAGTGGAAAAAGGAGAGCAAACTGCTCAGCGCG
TCTCAGCTCAGTGCCGAGGAGGAGGAAGAAAAACAGGCCGAGTGA

Translation (224 aa):
MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYPAPYGPGPGQDKGFATSSYYPPAGGGYGRAA
PCDYGPAPAFYREKESACALSGADEQPPFHPEPRKSDCAQDKSVFGETEEQKCSTPVYPWMQRMNSCNSS
SFGPSGRRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSA
SQLSAEEEEEKQAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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