NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, December 17, 2024, starting at 8:00 a.m. EST for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS5697.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5697.1 Public Homo sapiens 7 AGFG2 24 110 108 CCDS HistoryNCBI Gene:3268Re-query CCDS DB by CCDS ID:5697.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5697.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000300176.9 ENSP00000300176.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000300176.9Link to Ensembl Protein Viewer:ENSP00000300176.4Re-query CCDS DB by Nucleotide ID:ENST00000300176Re-query CCDS DB by Protein ID:ENSP00000300176
Original member Current member NCBI NM_006076.5 NP_006067.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006076.5Link to Protein Sequence:NP_006067.3Re-query CCDS DB by Nucleotide ID:NM_006076Re-query CCDS DB by Protein ID:NP_006067Link to BLAST:NP_006067.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006067.3 481 O95081-1 481 100% 0 0

Chromosomal Locations for CCDS 5697.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 100539347 100539567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100548822 100548915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100550396 100550511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100553347 100553500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100554093 100554258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100555610 100555735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100562259 100562379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100562594 100562682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100562863 100562946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100563834 100563962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100564218 100564303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100564932 100564991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1446 nt):
ATGGTGATGGCGGCGAAGAAGGGCCCGGGCCCGGGCGGCGGGGTCAGCGGGGGCAAGGCGGAGGCGGAGG
CGGCCTCGGAGGTGTGGTGCCGTCGGGTGCGGGAGCTGGGTGGCTGCAGCCAGGCCGGGAACCGCCACTG
CTTCGAGTGCGCCCAGCGCGGGGTCACCTACGTGGATATCACCGTGGGCAGCTTCGTGTGCACCACCTGC
TCCGGCCTCCTGAGAGGGCTGAACCCCCCTCATCGTGTCAAGTCAATCTCCATGACAACTTTCACTGAGC
CTGAAGTAGTATTCCTGCAATCCCGTGGAAATGAGGTTTGCCGGAAGATTTGGTTGGGTCTGTTTGATGC
TCGGACATCTTTAGTACCAGATTCCAGGGATCCTCAGAAAGTGAAGGAGTTTCTCCAGGAAAAATATGAG
AAGAAGAGATGGTATGTCCCCCCAGACCAAGTCAAGGGGCCCACTTATACCAAAGGCAGTGCCTCCACCC
CTGTGCAGGGCTCCATCCCAGAAGGGAAGCCCCTTCGGACACTTCTGGGTGATCCTGCACCGTCTCTCTC
AGTTGCTGCCTCCACCTCGAGCCAGCCCGTCAGTCAGTCTCACGCTCGGACATCCCAGGCCCGGAGCACT
CAGCCACCTCCCCACTCCTCTGTCAAAAAAGCCAGTACTGACCTGCTGGCTGACATCGGTGGAGACCCCT
TTGCTGCACCCCAGATGGCACCAGCTTTTGCTGCATTCCCTGCCTTTGGGGGCCAGACACCTTCCCAAGG
AGGCTTTGCCAACTTTGATGCCTTTAGCAGTGGCCCCAGCTCTTCTGTGTTTGGAAGCCTCCCTCCAGCT
GGTCAAGCCTCGTTCCAGGCCCAGCCAACTCCTGCAGGGAGCAGCCAGGGGACTCCATTTGGTGCCACTC
CCCTGGCACCCGCCAGTCAGCCAAACAGCCTCGCAGACGTGGGCAGCTTCCTGGGACCCGGGGTGCCCGC
TGCAGGTGTTCCTAGCAGCCTCTTCGGGATGGCTGGCCAGGTCCCCCCGCTCCAGTCTGTCACGATGGGC
GGCGGCGGCGGCAGCAGCACAGGGCTGGCCTTTGGAGCCTTCACTAACCCTTTCACAGCTCCCGCCGCCC
AGTCCCCGCTGCCTTCCACCAACCCGTTCCAGCCCAATGGCTTGGCGCCAGGGCCCGGCTTTGGGATGAG
CAGTGCTGGGCCTGGCTTCCCCCAGGCAGTGCCACCCACTGGGGCCTTTGCCAGCTCCTTCCCAGCACCG
CTGTTCCCCCCGCAGACCCCGCTTGTTCAGCAGCAGAATGGCTCTTCCTTCGGGGACTTAGGATCAGCCA
AGTTGGGGCAGAGGCCACTGAGCCAGCCAGCTGGGATCTCCACCAACCCCTTCATGACTGGACCCTCATC
AAGCCCATTCGCCTCCAAACCTCCAACCACCAACCCCTTCTTGTAG

Translation (481 aa):
MVMAAKKGPGPGGGVSGGKAEAEAASEVWCRRVRELGGCSQAGNRHCFECAQRGVTYVDITVGSFVCTTC
SGLLRGLNPPHRVKSISMTTFTEPEVVFLQSRGNEVCRKIWLGLFDARTSLVPDSRDPQKVKEFLQEKYE
KKRWYVPPDQVKGPTYTKGSASTPVQGSIPEGKPLRTLLGDPAPSLSVAASTSSQPVSQSHARTSQARST
QPPPHSSVKKASTDLLADIGGDPFAAPQMAPAFAAFPAFGGQTPSQGGFANFDAFSSGPSSSVFGSLPPA
GQASFQAQPTPAGSSQGTPFGATPLAPASQPNSLADVGSFLGPGVPAAGVPSSLFGMAGQVPPLQSVTMG
GGGGSSTGLAFGAFTNPFTAPAAQSPLPSTNPFQPNGLAPGPGFGMSSAGPGFPQAVPPTGAFASSFPAP
LFPPQTPLVQQQNGSSFGDLGSAKLGQRPLSQPAGISTNPFMTGPSSSPFASKPPTTNPFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH