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Report for CCDS3280.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3280.1 Public Homo sapiens 3 HRG 24 110 108 CCDS HistoryNCBI Gene:3273Re-query CCDS DB by CCDS ID:3280.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3280.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000232003.5 ENSP00000232003.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000232003.5Link to Ensembl Protein Viewer:ENSP00000232003.4Re-query CCDS DB by Nucleotide ID:ENST00000232003Re-query CCDS DB by Protein ID:ENSP00000232003
Original member Current member NCBI NM_000412.5 NP_000403.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000412.5Link to Protein Sequence:NP_000403.1Re-query CCDS DB by Nucleotide ID:NM_000412Re-query CCDS DB by Protein ID:NP_000403Link to BLAST:NP_000403.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000403.1 525 P04196 525 100% 0 0

Chromosomal Locations for CCDS 3280.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 186666032 186666214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 186668935 186669051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 186669938 186670028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 186671623 186671789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 186672787 186672867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 186675089 186675190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 186677047 186677883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1578 nt):
ATGAAGGCACTCATTGCAGCACTGCTTTTGATCACATTGCAGTATTCGTGTGCCGTGAGTCCCACTGACT
GCAGTGCTGTTGAGCCGGAGGCTGAGAAAGCTCTAGACCTGATCAATAAAAGGCGACGGGATGGCTACCT
TTTCCAATTGCTGCGGATTGCTGATGCCCACTTGGACAGAGTGGAAAATACAACTGTATATTACTTAGTC
TTAGATGTGCAAGAATCGGACTGTTCGGTCCTATCCAGGAAATACTGGAATGACTGTGAGCCACCTGATT
CCAGACGTCCATCTGAAATAGTGATCGGACAATGTAAGGTAATAGCTACAAGACATTCCCATGAATCTCA
GGACCTCAGAGTGATTGACTTTAACTGCACCACAAGTTCTGTCTCTTCAGCACTGGCCAATACCAAAGAT
AGTCCGGTCCTCATAGATTTCTTTGAGGATACTGAGCGCTACAGAAAACAAGCCAACAAAGCCCTTGAGA
AGTACAAAGAGGAGAATGATGACTTTGCCTCTTTCAGAGTGGACCGAATCGAGAGAGTTGCAAGAGTGAG
AGGAGGGGAAGGAACTGGTTACTTCGTGGACTTCTCTGTGCGGAACTGCCCCAGACACCATTTCCCCAGA
CACCCCAATGTCTTTGGATTCTGCAGAGCAGATTTGTTCTATGATGTAGAAGCCTTGGACTTGGAAAGCC
CGAAAAACCTTGTCATAAACTGTGAAGTCTTCGACCCTCAGGAACATGAGAACATCAATGGTGTACCGCC
TCATTTGGGACATCCCTTCCACTGGGGTGGGCATGAGCGTTCTTCTACCACCAAGCCTCCATTCAAGCCC
CATGGATCTAGAGATCATCATCATCCCCACAAGCCACACGAACATGGACCCCCACCTCCTCCAGATGAAA
GAGATCACTCACATGGACCCCCACTTCCACAAGGCCCTCCTCCACTATTGCCCATGTCCTGCTCAAGTTG
TCAACATGCCACTTTTGGCACAAATGGGGCCCAAAGACATTCTCATAATAATAATTCCAGTGACCTCCAT
CCCCATAAGCATCATTCCCATGAACAGCATCCCCACGGACACCATCCCCATGCACACCATCCTCATGAAC
ATGATACCCATAGACAGCATCCCCATGGACACCACCCCCATGGACACCATCCTCATGGACACCACCCCCA
TGGACACCATCCCCATGGACACCATCCCCACTGCCATGATTTCCAAGACTATGGACCTTGTGACCCACCA
CCCCATAACCAAGGTCACTGTTGCCATGGCCACGGCCCACCACCTGGGCACTTAAGAAGGCGAGGCCCAG
GTAAAGGACCCCGTCCCTTCCATTGCAGACAAATTGGATCTGTGTACCGACTCCCTCCTCTAAGAAAAGG
TGAGGTGCTGCCACTTCCTGAGGCCAATTTTCCCAGCTTCCCATTGCCGCACCACAAACATCCTCTAAAG
CCAGACAATCAGCCCTTTCCTCAATCAGTCTCTGAATCATGTCCAGGGAAGTTCAAGAGTGGGTTTCCAC
AAGTTTCCATGTTTTTTACACATACATTTCCAAAATAA

Translation (525 aa):
MKALIAALLLITLQYSCAVSPTDCSAVEPEAEKALDLINKRRRDGYLFQLLRIADAHLDRVENTTVYYLV
LDVQESDCSVLSRKYWNDCEPPDSRRPSEIVIGQCKVIATRHSHESQDLRVIDFNCTTSSVSSALANTKD
SPVLIDFFEDTERYRKQANKALEKYKEENDDFASFRVDRIERVARVRGGEGTGYFVDFSVRNCPRHHFPR
HPNVFGFCRADLFYDVEALDLESPKNLVINCEVFDPQEHENINGVPPHLGHPFHWGGHERSSTTKPPFKP
HGSRDHHHPHKPHEHGPPPPPDERDHSHGPPLPQGPPPLLPMSCSSCQHATFGTNGAQRHSHNNNSSDLH
PHKHHSHEQHPHGHHPHAHHPHEHDTHRQHPHGHHPHGHHPHGHHPHGHHPHGHHPHCHDFQDYGPCDPP
PHNQGHCCHGHGPPPGHLRRRGPGKGPRPFHCRQIGSVYRLPPLRKGEVLPLPEANFPSFPLPHHKHPLK
PDNQPFPQSVSESCPGKFKSGFPQVSMFFTHTFPK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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