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Report for CCDS26955.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26955.1 Public Mus musculus 14 Sh2d4b 23 108 98 CCDS HistoryNCBI Gene:328381Re-query CCDS DB by CCDS ID:26955.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26955.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000096000.3 ENSMUSP00000093699.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000096000.3Link to Ensembl Protein Viewer:ENSMUSP00000093699.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000096000Re-query CCDS DB by Protein ID:ENSMUSP00000093699
Original member NCBI NM_177816.4 NP_808484.2 Updated not alive Link to Nucleotide Sequence:NM_177816.4Link to Protein Sequence:NP_808484.2Re-query CCDS DB by Nucleotide ID:NM_177816Re-query CCDS DB by Protein ID:NP_808484
Current member NCBI NM_177816.5 NP_808484.2 Accepted alive Link to Nucleotide Sequence:NM_177816.5Link to Protein Sequence:NP_808484.2Re-query CCDS DB by Nucleotide ID:NM_177816Re-query CCDS DB by Protein ID:NP_808484Link to BLAST:NP_808484.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808484.2 431 A6X942-1 431 100% 0 0

Chromosomal Locations for CCDS 26955.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 40815868 40815960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 40820615 40820835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 40840225 40840349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 40842374 40842590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 40860592 40860739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 40872530 40872677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 40874080 40874239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 40892782 40892965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1296 nt):
ATGCTGCAGCAGATCCTGCAGGACATGTACATCGACCCGGAGCTGTTGGCCGAGCTCAGCGATGTGCAGA
AGCACATCCTCTTCTATAAGATGCGAGAGGAGCAGCTGCGGCGATGGAGGGAACGGGAGGCGTGGGATGC
CCTGGCTCAGGCAGAGGGCCTGAGGCCCGCAAAGGTCAAGAGAGCGAGCAACAAGCATCTCCAGTGGCTT
CTGGGAGCAGATGGTGAGGTCTGGGTGTGGGTCATGGGCGAAGGCCCTGGAGACAAGCCCTACGAAGAGA
TATCTGAAGAACTGATTGCAGAGAGGGCCCGGCTGCAAGCACAGAAAGAGGCTGAAGAGCTCTGGAGACA
GAAGGAAGCAGAGATCACCAAGAAGTTCCGGGATGCCTTGGCCAATGAGAAAGCTCGGATTCTGGCAGAG
AAGTGGAAAGTGGAGATGGAGGACCGCAAGGCTGCTAAAATTTTGGAGGAACGTATACACGAGGAATTCA
AGAGGAAAGAGGAAGAAGAGAGGCGGCGAGGGGAAGAACAGATTCGGCTCCAAGAGGAGCAGAGGGCAAA
GGAACTCTACTGGACTCTGAAGCAGGCCCAGCTGCACAGCCAAGCCAGTGAGAATGAGGAGCGTGAATGG
GAAGAACAGCTGCGGAGATCCAAGGCTGCTGATGAAGAGAGGAGCCGTCGTGCTCAGCGAGCCCGGGATG
AGTACCGGCGCCATTCACTCCGAGCCATCCAGAAGGGCACTGTTGCTGGCCTAAGCACCATGTTCCAAGA
GCTTGGCCAGAACCACGAGCAAGAGGCAAGACTTTATCACCAACTTCCTGACACCAGTCCACCATCACCC
CTCACAGGACCTGACAGGACCTGGGAGCGACCTCTGCGTCCACTCTCCAGAGAAGTCATCGTGCGCTGGT
TCAAGGAGGAACAGCTGCCTCGCCGAGCAGGCTTTGAGAGGAACACCAAGTCCATCGCCCCTTGGTTTCA
TGGAATTATTAGCCGAGAGAGTGCAGAAGACCTTCTGGAGAATATGACCGAGGGAGCATTTCTGGTCCGG
GTCAGTGAGAAGATCTGGGGTTATACCCTGTCCTACCGCCTGCAGAGAGGCTTCAAACACTTCCTTGTGG
ATGCTTCTGGGGACTTCTACAGCTTTCTGGGAGTGGACCCTAATCGCCATGCCACCCTAACAGATCTCAT
TGATTTCCACAAGGAGGAGATCATCACTGTTTCAGGGGGAGAGTTGCTACAGGAACCCTGTGGACAGAGG
GATAGCCCACCAGACTATCACCTGTTGTTTGAATGA

Translation (431 aa):
MLQQILQDMYIDPELLAELSDVQKHILFYKMREEQLRRWREREAWDALAQAEGLRPAKVKRASNKHLQWL
LGADGEVWVWVMGEGPGDKPYEEISEELIAERARLQAQKEAEELWRQKEAEITKKFRDALANEKARILAE
KWKVEMEDRKAAKILEERIHEEFKRKEEEERRRGEEQIRLQEEQRAKELYWTLKQAQLHSQASENEEREW
EEQLRRSKAADEERSRRAQRARDEYRRHSLRAIQKGTVAGLSTMFQELGQNHEQEARLYHQLPDTSPPSP
LTGPDRTWERPLRPLSREVIVRWFKEEQLPRRAGFERNTKSIAPWFHGIISRESAEDLLENMTEGAFLVR
VSEKIWGYTLSYRLQRGFKHFLVDASGDFYSFLGVDPNRHATLTDLIDFHKEEIITVSGGELLQEPCGQR
DSPPDYHLLFE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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