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Report for CCDS29380.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29380.1 Public Mus musculus 18 Zfp516 23 108 98 CCDS HistoryNCBI Gene:329003Re-query CCDS DB by CCDS ID:29380.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29380.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071233.6 ENSMUSP00000071216.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071233.6Link to Ensembl Protein Viewer:ENSMUSP00000071216.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000071233Re-query CCDS DB by Protein ID:ENSMUSP00000071216
Original member Current member EBI ENSMUST00000171238.7 ENSMUSP00000126629.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171238.7Link to Ensembl Protein Viewer:ENSMUSP00000126629.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171238Re-query CCDS DB by Protein ID:ENSMUSP00000126629
Original member Current member NCBI NM_001177464.1 NP_001170935.1 Accepted alive Link to Nucleotide Sequence:NM_001177464.1Link to Protein Sequence:NP_001170935.1Re-query CCDS DB by Nucleotide ID:NM_001177464Re-query CCDS DB by Protein ID:NP_001170935Link to BLAST:NP_001170935.1
Original member Current member NCBI NM_183033.2 NP_898854.1 Accepted alive Link to Nucleotide Sequence:NM_183033.2Link to Protein Sequence:NP_898854.1Re-query CCDS DB by Nucleotide ID:NM_183033Re-query CCDS DB by Protein ID:NP_898854Link to BLAST:NP_898854.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001170935.1 1157 Q7TSH3 1157 100% 0 0
NP_898854.1 1157 Q7TSH3 1157 100% 0 0

Chromosomal Locations for CCDS 29380.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 82955679 82957449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 82986744 82988198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 82993070 82993189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 82994470 82994537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 83001273 83001332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3474 nt):
ATGGATCGCAGCAGAGAGGCTGAGATGGAGCTGAGGAGAGGACCCAGCCCACCCAGGGCTGGCAGGAGCC
ACGAAGTGGATGGGGACAAGGCTGCCTGCCACAGCTGCTGCATCTGTGGCAAGAGCTTTCCTTTCCAGAG
CTCCCTGTCACAGCACATGCGCAAGCACACGGGAGAGAAGCCCTACAAGTGTCCCTACTGTGATCACAGG
GCTTCCCAGAAGGGCAACCTCAAGATTCATATCCGCAGCCACCGGACAGGAACTCTGATTCAGGGGCACG
AGCCAGAGGCGGGAGAGGCTCAGCTGGGTGAGATGCGTGTCTCTGAGGGCCTGGATGGGTGTGCCAGCCC
TACTAAGAGCACCTCTGCCTGTAACCGCGTGCTGAACGGGGCCGTGCCGATGGACGGCAGCAAGATTCTG
CTCAGGAGCAGCCGCAAGGAGGTGGAGGGTGCGGCCAGCGCCCAGGAAGACACTGAGGCCACGGTGCCGT
GCTCCTTCTGTAAGAGCCGGTTCGAGCGCAAGAAGGACCTGGAGCTGCATGTGCACCAGGCCCACAAGCC
GTTCAAGTGCAGGCTGTGCAGCTATGTCACCCTGCGGGAGGAGTCTCTGCTCAGCCACATAGAGAGGGAC
CACATCACCGCACAGGTGCCCAATGGCAGCGAGGCCTGTGTGGAGAACGGCAAACCTGAGCTGAGCCCTG
GGGAGTTTCCCTGCGAGGTGTGTGGCCAGGCCTTCAGCCAGACCTGGTTCCTGAAGGCACACATGAAGAA
ACACCGGGGCTCCTTTGACCACGGCTGCCACATCTGCGGCCGGAGATTCAAAGAGCCTTGGTTCCTCAAG
AACCATATGAAGGCGCATGGACCCAAGGCAGGAAGCAAGAACAGACCCAAGAGTGAGCTGGATCCCATTG
CCACCATCAACAATGTGGTGCAGGAGGAAGTCATTGTCGCTGGCCTGTCCCTCTATGAGGTCTGCACAAA
GTGCGGGAACCTGTTTACAAACCTGGACAGCTTGAACGCCCATAACGCCATACACCGTAAAGTTGAAGCC
AGCCGGATTCGAGCCCCGGCTGAGGAGGGGGACTCAGAGGACCCCCTGGACACTAAGCAGTTCTTCTTAC
AGTGCCTGAATCTGACACCATATGTGGCTGGTGATGTGTCCCCCGGTGGGCAGGCTGGACGGCGGGTGGC
TGAATTGGACCCCGTCAACAGCTATCAGGCCTGGCAGCTAGCTACCAGGGGTAAGGTGGCTGAGCCGGCC
GAGTACCTCAAGTACGGGACCTGGGACGAGGCGCTGGCAGGGGATGTAGCCTTTGACAAAGACAAGCGTG
AGTATATACTGGTGAGCCAGGAAAAACGCAAGCGTGAACAGGATGCTCCGGCTACCCAAGCTCCCCCGAG
GAAGAGGGCCAGTGTACCTGGGGACCCCATGCTTTCTGGCCACCTTGATCCCCGGCCAACCTCACGCCCC
AACCGCAGGGCCTCGGCCACCACTGGCCAGGGCAAGTCCTCTGAGTGCTTCGAGTGCGGCAAGATCTTCC
GCACCTACCACCAGATGGTGCTCCACTCCCGCGTGCACCGCCGTGCACGCCGTGACAGGGATCCTGAAGG
GGACAGAGCAGCGCGTGCCCGTTGCGGTTCACTCAGCGAGGGTGACTCGGCTTCCCAGCCAAGCAGCCCT
GGCTCAGCCTGCGCCATTGCTGACTCCCCTGGCCTGGCTGAGGAAGTGGTGGATGACAGTGGTGAAGAGG
CTGTGCCTGAACCCGCATCAGGGGGCCAGCCTCGCCACTGCTGCTCTTCTGGAGAGGTGACACCCACAGC
ACTCTCCAACGGAGACCAGAATCACAAGCTTGGAAATAACCTGCCAGAGAAAGACATCAGCGAGCCCAAG
GTGGGGAGCGCCATGCCGTCTGTGTCCATACTTGAAAACAGCAGCAGAGAGACCACCAAGGGTCCCGAGC
AGCATAGATACTCTCTCGACCTAAAGATGCCAGCATTTCACCCCAAGCAGGAGGTGCCCAGCACTACTGA
CCGGGTAGACTTCCCTGCGAGCATGGAGATAACTAGCCTGCAGCACACCTTGGACAGCCAGGCCGGGCAT
TCTAAAGAAAAGCTGTCCGATTTGCACAAGGAGCACTGCGGGGTAGGAAAGCGGGCATCCGCCCCGGACC
TGGTCCCTCTGGACTTGAGCATGAGGTCGAGCAGGGATGAGCCCAGCGGTAAAGAAGCGTGCTCCCTGCA
GGCGGCCCTGGTCATTCACCCGTGTCCTTACTGTACCCACAAGACCTACTACCCCGAGGTCCTGTGGATG
CACAAGCGCATTTGGCACAGGGTCAGCTGCAGCTCTGTCGCACCTCCTTGGACTCAGCCCAGTGGCCACA
AGAGCATTCGCAGCAACCTGGTTTTCCTCACTCGCAGTGGGCGCACAGGCCCTCCGCCTGCTCTTGGGGG
CAAAGAGTGCCAGCCCCTGCTTCTTTCTCGCTTTGCCCGCACCCAGGTGCCAGGTGGGGCACCAGGATCA
AAGGGCAGCTCCTCTCCCCTCGGGGTGACCACAAAAGCCGCTAGCATGCCTAAGAATAAGGAGAGCCATT
CCGGGGGCCCCTGTGCTCTGTGGGCCTCTGGCCCCGATGGATATCGACAGACCAGAGCTGGACATGGCCA
GGAGCCTCCCAGCGCTGCAGTGCAGGGGCCCCTGGCCAAACCCAAACAGGAGGGCAGCTCCAGGTTGGCA
CCTTCCCCGGGCAGTGGGAGCCTCAGCAGAAGTACCACCCCCACACCCTCAGTGATAACCCGTGTTGGTG
CCCAGCCCTCGGCCAATAGCAAACCAGTGGAGAAACTCGGGGGCCCAGCAGTGGGGACTGGCTTTACCCC
TCCGAATAAGCACAGTGCCCCAGACTCTCTGAAAGCCAAATTCAGTCCTCAGCCTCAGGGTCAGCCTCCA
TTGAAAGGTGAAGGAGGCTCTCCTCTACCTCCCCGAGAACCCTCTGTGAAGGCGGCCCAGGAGCTGAGAA
CACTAGCCACCTGCGCAGCGGGGTCCAGAGGGGAGGCGGCCTTGCAAGCCCCACCTGGTGCGCCTCCCAC
CTTAAACTCCGCCAAGCAGGAGCCGGCAGCTGAGGGGCAGGAGAAGCGCTTGGATATCCTCAGTATCTTT
AAGACGTACATTCCAAAGGACTTCGCCACCCTCTACCAGGGCTGGGGTGTCAGCAGCCCTGGGCCCGAGC
ACAGAGGGACATCACTAACAGGGACACCACGGACACAGGCCCACCAGGGAGACTTTGTCTGTGTGGAGTG
CGGCAAGAGTTTCCATCAGCCCAGCCAACTCAGGGCCCACCTTCGGGCACACACAGTGGTGTTTGAGTGT
GACGGTCCACGAGATTCTGAAGTTCACACAGCCTCCACGGATGCCCCTAAACAAGGGAGAGACCATACTA
CCCCAGGGACTGTGCCAGCAGGGCCCCTCCGAAAGGGGATCTAG

Translation (1157 aa):
MDRSREAEMELRRGPSPPRAGRSHEVDGDKAACHSCCICGKSFPFQSSLSQHMRKHTGEKPYKCPYCDHR
ASQKGNLKIHIRSHRTGTLIQGHEPEAGEAQLGEMRVSEGLDGCASPTKSTSACNRVLNGAVPMDGSKIL
LRSSRKEVEGAASAQEDTEATVPCSFCKSRFERKKDLELHVHQAHKPFKCRLCSYVTLREESLLSHIERD
HITAQVPNGSEACVENGKPELSPGEFPCEVCGQAFSQTWFLKAHMKKHRGSFDHGCHICGRRFKEPWFLK
NHMKAHGPKAGSKNRPKSELDPIATINNVVQEEVIVAGLSLYEVCTKCGNLFTNLDSLNAHNAIHRKVEA
SRIRAPAEEGDSEDPLDTKQFFLQCLNLTPYVAGDVSPGGQAGRRVAELDPVNSYQAWQLATRGKVAEPA
EYLKYGTWDEALAGDVAFDKDKREYILVSQEKRKREQDAPATQAPPRKRASVPGDPMLSGHLDPRPTSRP
NRRASATTGQGKSSECFECGKIFRTYHQMVLHSRVHRRARRDRDPEGDRAARARCGSLSEGDSASQPSSP
GSACAIADSPGLAEEVVDDSGEEAVPEPASGGQPRHCCSSGEVTPTALSNGDQNHKLGNNLPEKDISEPK
VGSAMPSVSILENSSRETTKGPEQHRYSLDLKMPAFHPKQEVPSTTDRVDFPASMEITSLQHTLDSQAGH
SKEKLSDLHKEHCGVGKRASAPDLVPLDLSMRSSRDEPSGKEACSLQAALVIHPCPYCTHKTYYPEVLWM
HKRIWHRVSCSSVAPPWTQPSGHKSIRSNLVFLTRSGRTGPPPALGGKECQPLLLSRFARTQVPGGAPGS
KGSSSPLGVTTKAASMPKNKESHSGGPCALWASGPDGYRQTRAGHGQEPPSAAVQGPLAKPKQEGSSRLA
PSPGSGSLSRSTTPTPSVITRVGAQPSANSKPVEKLGGPAVGTGFTPPNKHSAPDSLKAKFSPQPQGQPP
LKGEGGSPLPPREPSVKAAQELRTLATCAAGSRGEAALQAPPGAPPTLNSAKQEPAAEGQEKRLDILSIF
KTYIPKDFATLYQGWGVSSPGPEHRGTSLTGTPRTQAHQGDFVCVECGKSFHQPSQLRAHLRAHTVVFEC
DGPRDSEVHTASTDAPKQGRDHTTPGTVPAGPLRKGI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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