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Report for CCDS39253.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39253.1 Public Mus musculus 5 Ccdc63 23 108 98 CCDS HistoryNCBI Gene:330188Re-query CCDS DB by CCDS ID:39253.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39253.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058960.13 ENSMUSP00000050582.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058960.13Link to Ensembl Protein Viewer:ENSMUSP00000050582.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000058960Re-query CCDS DB by Protein ID:ENSMUSP00000050582
Original member Current member NCBI NM_183307.4 NP_899130.1 Accepted alive Link to Nucleotide Sequence:NM_183307.4Link to Protein Sequence:NP_899130.1Re-query CCDS DB by Nucleotide ID:NM_183307Re-query CCDS DB by Protein ID:NP_899130Link to BLAST:NP_899130.1

Chromosomal Locations for CCDS 39253.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 122108108 122108247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122109172 122109375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122110860 122111052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122113134 122113208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122116810 122117030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122120918 122121099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122122726 122122907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122124926 122125045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122127407 122127596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122129723 122129955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122130289 122130297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1749 nt):
ATGCCAGTGAAAAAATACAGATGGACTACCACTGTAGGTCGTGTGGGCATCCTCTTTCTCTGTCTTGCCC
AGATGAAGAAAGTCAGGAGGAAGGGCTCTTCAGGCCTTTCGGAACTTTCCGAGAAGGCCAGGGAGCAGCT
CGCCCAGGCAGAGCTACGGAAACTGAGGCAGCAGTTCCGCAAGATGGTAGACAGCCGCAAGTCCTTCAAC
TTCCGCCACCAGCGTATGATCGCCGGCCAATACAAGGAAATAGAGACTCTGAAAGCTGAACAGGCCGAGA
CCACCATGCTTCTAAGCCTCGTGAAGTCTCCGAAGAACCTGGACATCAACCAGAAAAACTTCATGGAACT
ACGCTTCCTGCTGCAGACCAAGGGGGACTACGAGGCGCTCATCTCCTCCATGAAGGTGCTGCTGGGAGAA
CTGGATGATAAGATCGTTCAGATGGAGAGAAAGATCACGAACCAGAGACAGCTCTTCTTGAGGACACAAG
AGGCCAATAATCCCAAGAGACTGCAGAGACAGATCCATGTTCTGGAGTCCCGACTGAACCTGGTCACTGT
CCACTTTGACACGATGCTGACCTCTAACTCCCAGCTCCGGAAGGAGATTGAGGATCTCCTCTTTGAGAAG
GCCGCCTACGACCACGTCTACCAGCAGCTTCAGCGGCGTCTGCAGACACAGAAGAAGACCATGAACGTGG
CCATTGAGCAGTCTGCCCAGGCCTATGAGCAGAGAGTGGAGGCCATGGCTCGGATGGCTGCCATGAAGGA
CCGCCAGCAGAAAGACATCTCTCAGTACAACCTGGAGATCCGGGAACTGGAACGTCTATATGATCACGAG
ACGAAACTCAAGTCCTTCCTGCTGGCCAAGCTTAACGACCGCTCTGAATTTGAGGACCAGGCCAAGAAGC
AGGAAGATGTCAAATCCAAGAAGCTTGGGAAGAAGGGGAAGGGCGAGAGTTTCGCGAGCTATGAGGTGGC
GCACCTGCGGCTGCTGAAGCTGGCGGAGAACGGGGACCTGAACCAGCTCACCGAGGATTTCCTGGCCAAG
GAGGAGAAGAATTTTGCTCGTTTCACTTATGTCACCGAGCTCAACAATGACATGGAGACCATGCACAAGA
AGACCCAGCGGATCCAGGATGACATCATCAACTTGCGGTCACAGCAGCAGACCTCCCATGAGGGCACCCG
GAGCATCCTGAAACAGATGGAGGAGAAACTGAGAAAGACCACGCAGGAAGCGGACATTTATGAGACCAAA
TACAAGGAGATGAGCAAGACCCTGGAGTATCTCAAGAACTCGGTGGAGAAGATGTTTAAGAAGATCAACT
GCGATGCCACTGAGATCCTGGGCAAGCTGGGCGAGTCCGGGAAGGTCACGGACATCAATCTGCAGCAGTA
TTTTGCTATCATAGAAAAGAAGACAAATGACCTGCTGCTTCTAGAGTCCTTCCGGCGCCTGCAGGAGGCA
GAGGGGCCCGATGTCGATGTCCCACAACCCTTTGTCAACCCCTTCTGGGGCGGCTCTGCCCTCCTCAAGC
CCCCAGAGCCCATAAGGGTTGTGCTGCCTGTGTTTGGGGCAGACTCCTTCAGTGACAAACTTGAAGAGGT
GGACTCTCCTCTGGACCACAGTACCCTCCAGCAGATGGTCTTGGAGAACTTCCTTCAGAGGGAACGCACA
AAAGAACTACAGGACACCATGTCAGAGAAGGGGGACGAGATAAGGCTCAAGAAGAAGGTGATAGGCTGA

Translation (582 aa):
MPVKKYRWTTTVGRVGILFLCLAQMKKVRRKGSSGLSELSEKAREQLAQAELRKLRQQFRKMVDSRKSFN
FRHQRMIAGQYKEIETLKAEQAETTMLLSLVKSPKNLDINQKNFMELRFLLQTKGDYEALISSMKVLLGE
LDDKIVQMERKITNQRQLFLRTQEANNPKRLQRQIHVLESRLNLVTVHFDTMLTSNSQLRKEIEDLLFEK
AAYDHVYQQLQRRLQTQKKTMNVAIEQSAQAYEQRVEAMARMAAMKDRQQKDISQYNLEIRELERLYDHE
TKLKSFLLAKLNDRSEFEDQAKKQEDVKSKKLGKKGKGESFASYEVAHLRLLKLAENGDLNQLTEDFLAK
EEKNFARFTYVTELNNDMETMHKKTQRIQDDIINLRSQQQTSHEGTRSILKQMEEKLRKTTQEADIYETK
YKEMSKTLEYLKNSVEKMFKKINCDATEILGKLGESGKVTDINLQQYFAIIEKKTNDLLLLESFRRLQEA
EGPDVDVPQPFVNPFWGGSALLKPPEPIRVVLPVFGADSFSDKLEEVDSPLDHSTLQQMVLENFLQRERT
KELQDTMSEKGDEIRLKKKVIG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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